Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 214 3e-50
seq8880 114 2e-20
seq82826 109 1e-18
seq4859 105 1e-17
seq12667 93.3 8e-14
>seq4461
Length=101207
Score = 214 bits (236), Expect = 3e-50
Identities = 462/693 (67%), Gaps = 37/693 (5%)
Strand=Plus/Minus
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||||| ||| |||||||||| ||||| || ||| || || |||||||| | ||
Sbjct 14616 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAG 14557
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
|||||| ||||||||||||||||| | ||| | ||| |||||||||||
Sbjct 14556 CAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 14497
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
|||| | |||| | || |||||||||| |||| || | || |||||
Sbjct 14496 CATGTC-----GGTCGGAGTCTTCT----CCCACATGTCGTACTGGAGGATGCCTTTGCT 14446
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCT 244388
||| || ||| || || ||| ||| ||||| || ||| ||||| | |||||
Sbjct 14445 GACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAGCTGG 14387
Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC---ATCTTGTTCATGTCGCGGGCCT 244445
| || ||||||||||||||||| ||||||||||| || ||| || | | || |
Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTT---GAGCTT 14330
Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505
| || ||| || | ||||| |||||| |||| |||| ||||| || || |
Sbjct 14329 CGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAA 14270
Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565
| |||||||| | ||| ||||||||||| | | |||||||| |||||||| |||||
Sbjct 14269 TCCCGATGGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGA 14210
Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625
|| || | |||||| ||||| ||||| | ||| ||||||| || ||
Sbjct 14209 TCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAA 14150
Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685
|||| | || || || || | | || || ||||||||||| |
Sbjct 14149 AGTCAAA-----AG------TCCGCTCAGG----CGTGACGTACATGTTGAGGGCGATGG 14105
Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745
||||||||| ||||| |||||||| ||| | ||||||||| ||
Sbjct 14104 AGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNN 14045
Query 244746 GGTTA-----CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800
|||||||||||||| ||||||| ||| || ||| ||| ||||||||
Sbjct 14044 NNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGC 13985
Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833
||| |||||||||||| ||||| |||||| ||
Sbjct 13984 GTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTC 13952
Score = 107 bits (118), Expect = 4e-18
Identities = 268/399 (67%), Gaps = 6/399 (2%)
Strand=Plus/Minus
Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257
||||| | || || | || || |||| |||||| ||||| ||||||| || |
Sbjct 13658 CGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATGTAGCTCCCAGTC 13599
Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317
|||| | ||| | | || ||| | ||||| ||| ||||| |||||||||||
Sbjct 13598 GATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCAC 13539
Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377
||| | |||||| |||||||| |||||||| ||||||| |||||| ||||||
Sbjct 13538 TGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAG 13479
Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
||||||||| ||| | | | | | |||||| || || || ||||||||| ||
Sbjct 13478 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC 13419
Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496
| | || ||| || | ||| |||| | || || |||| || ||||||||
Sbjct 13418 CA-CTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGAT 13360
Query 245497 -CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCCC 245554
| | | | | ||||||||| ||||||| ||||| |||| | | || |
Sbjct 13359 ACCGACCGACAC-CCTCATGAGCATGTGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATC 13302
Query 245555 TTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593
|| |||| ||||||||||| || || ||||| ||||||
Sbjct 13301 TTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAG 13263
>seq8880
Length=69162
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070
||| |||||||| || ||||| | ||| ||| | ||| |||| ||||||||| ||
Sbjct 11378 CATAAAGAGGTCTGGAATCCATAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCTTCTTT 11437
Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130
|| ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| |||
Sbjct 11438 ACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCAGGGCTCCAAGTA 11497
Query 245131 GACAGCGAGGGCGCCGGG 245148
|| || | ||| || ||
Sbjct 11498 CACCGCAAAGGCCCCTGG 11515
Score = 113 bits (124), Expect = 9e-20
Identities = 159/217 (73%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG--TCGCGCTGGGCCAGCT 244379
||||||||||| || ||| |||| ||| ||||| ||| | |||| |||| |
Sbjct 9697 CCCTTGCTGACAGGAGAGCCAGCGTACGTCTCATAGGGTCCGAATTCTGCTG--CCAGTT 9754
Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439
||| || | || ||||| ||||||||||||||||||||||| |||| | || |
Sbjct 9755 CACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTGA-GTAAC 9813
Query 244440 -GGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496
|||||| ||| | | ||| ||| || ||| | |||||| |||||||||| ||||
Sbjct 9814 TGGGCCT--CCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGACCCT 9871
Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533
|||| || || || || |||||||| |||||||||||
Sbjct 9872 GCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGA 9908
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||| |||||||| || ||||| | ||| ||||| |||||| || | ||| |||
Sbjct 9288 ACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTAAGCCTCTATG 9347
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
||| |||| ||||| ||||| || ||| || || ||||| || | || || ||
Sbjct 9348 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGAAGG 9407
Query 244217 CTGTTCCTCACGCCGTGCCT 244236
||||||||||| ||||||||
Sbjct 9408 CTGTTCCTCACACCGTGCCT 9427
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789
|| || || ||||| || || ||| | |||||||||||||| | || || |||| |||
Sbjct 10907 ACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 10966
Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821
||||||||||||||||||||||||| ||||
Sbjct 10967 CTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998
>seq82826
Length=583
Score = 109 bits (120), Expect = 1e-18
Identities = 102/127 (80%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| || || ||||||| ||||| ||||||||||| ||| |||| ||| |||||||||
Sbjct 139 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 198
Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| | | | | | ||||||||| || |||||| ||||| |||||||||||
Sbjct 199 GGCTGAAG-AAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGA 257
Query 42825 GACGAGG 42831
|||||||
Sbjct 258 GACGAGG 264
>seq4859
Length=382710
Score = 105 bits (116), Expect = 1e-17
Identities = 106/135 (79%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||| | ||||| || ||| | || || ||||| ||||||||||| ||| | || ||
Sbjct 368801 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 368860
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
|||||| |||||| ||| ||| ||| | |||||||| || |||||||| || |||||
Sbjct 368861 GCCATCTACTGGCTAAAGAAGAGAGGCCT-AATGCCCGGCCTTACCTTCTCCAATGAACT 368919
Query 42815 CATCAGCAGGGACGA 42829
|||||||||||| ||
Sbjct 368920 CATCAGCAGGGATGA 368934
>seq12667
Length=72081
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014
||||||| ||| ||||||||||| |||||| | | |||||| || ||||| || |||
Sbjct 17640 GACAGGAGCACCGCGATCGGACAGGTGATCAGCGCTTACCTGGAGAAGAAGAGTGAGCTG 17699
Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058
|| || ||| ||| ||||| |||||||| |||||||| |||||
Sbjct 17700 GAGGACCACACCGTTCACCTGCTGTTCTCTGCCAACCGCTGGGA 17743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943199901972160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |