Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4461 214 3e-50 seq8880 114 2e-20 seq82826 109 1e-18 seq4859 105 1e-17 seq12667 93.3 8e-14 >seq4461 Length=101207 Score = 214 bits (236), Expect = 3e-50 Identities = 462/693 (67%), Gaps = 37/693 (5%) Strand=Plus/Minus Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||||| ||| |||||||||| ||||| || ||| || || |||||||| | || Sbjct 14616 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAG 14557 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| ||||||||||||||||| | ||| | ||| ||||||||||| Sbjct 14556 CAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 14497 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 |||| | |||| | || |||||||||| |||| || | || ||||| Sbjct 14496 CATGTC-----GGTCGGAGTCTTCT----CCCACATGTCGTACTGGAGGATGCCTTTGCT 14446 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCT 244388 ||| || ||| || || ||| ||| ||||| || ||| ||||| | ||||| Sbjct 14445 GACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAGCTGG 14387 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC---ATCTTGTTCATGTCGCGGGCCT 244445 | || ||||||||||||||||| ||||||||||| || ||| || | | || | Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTT---GAGCTT 14330 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | || ||| || | ||||| |||||| |||| |||| ||||| || || | Sbjct 14329 CGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAA 14270 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | |||||||| | ||| ||||||||||| | | |||||||| |||||||| ||||| Sbjct 14269 TCCCGATGGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGA 14210 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 || || | |||||| ||||| ||||| | ||| ||||||| || || Sbjct 14209 TCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAA 14150 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| | || || || || | | || || ||||||||||| | Sbjct 14149 AGTCAAA-----AG------TCCGCTCAGG----CGTGACGTACATGTTGAGGGCGATGG 14105 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||||||||| ||||| |||||||| ||| | ||||||||| || Sbjct 14104 AGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNN 14045 Query 244746 GGTTA-----CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 |||||||||||||| ||||||| ||| || ||| ||| |||||||| Sbjct 14044 NNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGC 13985 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| |||||||||||| ||||| |||||| || Sbjct 13984 GTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTC 13952 Score = 107 bits (118), Expect = 4e-18 Identities = 268/399 (67%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 ||||| | || || | || || |||| |||||| ||||| ||||||| || | Sbjct 13658 CGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATGTAGCTCCCAGTC 13599 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||| | | || ||| | ||||| ||| ||||| ||||||||||| Sbjct 13598 GATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCAC 13539 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| |||||||| |||||||| ||||||| |||||| |||||| Sbjct 13538 TGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAG 13479 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 13478 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC 13419 Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | || ||| || | ||| |||| | || || |||| || |||||||| Sbjct 13418 CA-CTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGAT 13360 Query 245497 -CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCCC 245554 | | | | | ||||||||| ||||||| ||||| |||| | | || | Sbjct 13359 ACCGACCGACAC-CCTCATGAGCATGTGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATC 13302 Query 245555 TTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 || |||| ||||||||||| || || ||||| |||||| Sbjct 13301 TTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAG 13263 >seq8880 Length=69162 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| |||||||| || ||||| | ||| ||| | ||| |||| ||||||||| || Sbjct 11378 CATAAAGAGGTCTGGAATCCATAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCTTCTTT 11437 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| ||| Sbjct 11438 ACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCAGGGCTCCAAGTA 11497 Query 245131 GACAGCGAGGGCGCCGGG 245148 || || | ||| || || Sbjct 11498 CACCGCAAAGGCCCCTGG 11515 Score = 113 bits (124), Expect = 9e-20 Identities = 159/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG--TCGCGCTGGGCCAGCT 244379 ||||||||||| || ||| |||| ||| ||||| ||| | |||| |||| | Sbjct 9697 CCCTTGCTGACAGGAGAGCCAGCGTACGTCTCATAGGGTCCGAATTCTGCTG--CCAGTT 9754 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 ||| || | || ||||| ||||||||||||||||||||||| |||| | || | Sbjct 9755 CACAACTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCGAAGATGTGAATGTTGA-GTAAC 9813 Query 244440 -GGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 |||||| ||| | | ||| ||| || ||| | |||||| |||||||||| |||| Sbjct 9814 TGGGCCT--CCGGACTTTCGAATGGGTAGCGCATGAGGATGAAGGCGTCGGCCAGACCCT 9871 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| || || || || |||||||| ||||||||||| Sbjct 9872 GCACACCAATTCCTATTGGTCTGTGACGCTTGTTGGA 9908 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 9288 ACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTAAGCCTCTATG 9347 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | || || || Sbjct 9348 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGAAGG 9407 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 9408 CTGTTCCTCACACCGTGCCT 9427 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 || || || ||||| || || ||| | |||||||||||||| | || || |||| ||| Sbjct 10907 ACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 10966 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||||||||||||||||||||| |||| Sbjct 10967 CTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998 >seq82826 Length=583 Score = 109 bits (120), Expect = 1e-18 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 139 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 198 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | | | | ||||||||| || |||||| ||||| ||||||||||| Sbjct 199 GGCTGAAG-AAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGA 257 Query 42825 GACGAGG 42831 ||||||| Sbjct 258 GACGAGG 264 >seq4859 Length=382710 Score = 105 bits (116), Expect = 1e-17 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | ||||| || ||| | || || ||||| ||||||||||| ||| | || || Sbjct 368801 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 368860 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| ||| ||| | |||||||| || |||||||| || ||||| Sbjct 368861 GCCATCTACTGGCTAAAGAAGAGAGGCCT-AATGCCCGGCCTTACCTTCTCCAATGAACT 368919 Query 42815 CATCAGCAGGGACGA 42829 |||||||||||| || Sbjct 368920 CATCAGCAGGGATGA 368934 >seq12667 Length=72081 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||| ||| ||||||||||| |||||| | | |||||| || ||||| || ||| Sbjct 17640 GACAGGAGCACCGCGATCGGACAGGTGATCAGCGCTTACCTGGAGAAGAAGAGTGAGCTG 17699 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 || || ||| ||| ||||| |||||||| |||||||| ||||| Sbjct 17700 GAGGACCACACCGTTCACCTGCTGTTCTCTGCCAACCGCTGGGA 17743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943199901972160