Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 125 9e-24
seq8880 95.1 1e-14
seq82826 87.8 2e-12
seq4859 82.4 9e-11
>seq4461
Length=101207
Score = 125 bits (138), Expect = 9e-24
Identities = 159/214 (74%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159
||||||| | | || || ||||||| || ||||| |||| |||| | |||| |||
Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485
Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217
|||||||| |||| || |||| ||| || || ||||||||||||||||| | ||||
Sbjct 13484 AAGCAGCTGGACAGCTGCGGCC--GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGT 13427
Query 115218 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276
|| ||||| || | | |||| | | ||||||||| | | |||| |||||||||
Sbjct 13426 GGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCT 13368
Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGT 115310
||||| ||||||| ||| |||| ||| | |||||
Sbjct 13367 CCGTGGATACCGACCGACACCCTCATGAGCATGT 13334
Score = 116 bits (128), Expect = 4e-21
Identities = 194/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013
||||| | ||| | | |||| ||||| |||| ||| |||||||||||||| |||||||||
Sbjct 14624 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATG 14565
Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073
|| |||| || |||||||| | | || | || || ||||| || | |
Sbjct 14564 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 14505
Query 114074 CAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130
||||| | || | | |||| || |||||| || |||||||||| |||| |
Sbjct 14504 CAGTCCCACATGTCGGTCGGAGTCT---TCTCCCACATGTCGTACTGGAGGATGCCTTTG 14448
Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190
| | || || || ||| | |||||||| || ||| | |||||| |||| ||||
Sbjct 14447 CTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTG 14388
Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGA 114229
||||| ||||| |||| || |||||||| || ||| ||
Sbjct 14387 GCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGA 14349
>seq8880
Length=69162
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| |||||
Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033
||||||||||| || |||| |||||||||||
Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412
>seq82826
Length=583
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125
||||||| | | |||||| || || |||| ||| || ||||| || || || ||||
Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205
Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185
||| |||||| || || ||| || || |||||||||||||||||||| |||||||
Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145
Query 126186 CAAAGAGACGCTC 126198
| | | ||||||
Sbjct 144 CCACCACACGCTC 132
>seq4859
Length=382710
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138
|||||||||||| |||||| || || ||||| || || | |||||| | |||| | ||
Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864
Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198
||| |||||| || ||||||||||| ||||| ||| || || || | || |||||
Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596632922749280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |