Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4461 125 9e-24 seq8880 95.1 1e-14 seq82826 87.8 2e-12 seq4859 82.4 9e-11 >seq4461 Length=101207 Score = 125 bits (138), Expect = 9e-24 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 115100 GCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159 ||||||| | | || || ||||||| || ||||| |||| |||| | |||| ||| Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217 |||||||| |||| || |||| ||| || || ||||||||||||||||| | |||| Sbjct 13484 AAGCAGCTGGACAGCTGCGGCC--GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGT 13427 Query 115218 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276 || ||||| || | | |||| | | ||||||||| | | |||| ||||||||| Sbjct 13426 GGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCT 13368 Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 ||||| ||||||| ||| |||| ||| | ||||| Sbjct 13367 CCGTGGATACCGACCGACACCCTCATGAGCATGT 13334 Score = 116 bits (128), Expect = 4e-21 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| | ||| | | |||| ||||| |||| ||| |||||||||||||| ||||||||| Sbjct 14624 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATG 14565 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || |||| || |||||||| | | || | || || ||||| || | | Sbjct 14564 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 14505 Query 114074 CAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130 ||||| | || | | |||| || |||||| || |||||||||| |||| | Sbjct 14504 CAGTCCCACATGTCGGTCGGAGTCT---TCTCCCACATGTCGTACTGGAGGATGCCTTTG 14448 Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 114190 | | || || || ||| | |||||||| || ||| | |||||| |||| |||| Sbjct 14447 CTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTG 14388 Query 114191 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGA 114229 ||||| ||||| |||| || |||||||| || ||| || Sbjct 14387 GCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGA 14349 >seq8880 Length=69162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| ||||||||||| Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412 >seq82826 Length=583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || ||| || || |||||||||||||||||||| ||||||| Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 144 CCACCACACGCTC 132 >seq4859 Length=382710 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| |||||| || || ||||| || || | |||||| | |||| | || Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 ||| |||||| || ||||||||||| ||||| ||| || || || | || ||||| Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596632922749280