Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq60294 86.0 7e-12 seq27000 86.0 7e-12 seq34451 82.4 8e-11 seq18185 82.4 8e-11 >seq60294 Length=274 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||| ||||||||||||| |||||||||||| ||| ||||||||| Sbjct 16 CTCCCCGTCAGGGAATCGTACCCTGGTCTCCCACGTGACAGGCGGGGATAATCACCACTA 75 Query 57067 TACTACCGAGGA-TTGA 57082 ||||| |||||| |||| Sbjct 76 TACTAACGAGGACTTGA 92 >seq27000 Length=4504 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||| |||||||| || | | ||| |||||| |||||||||||||| |||||| ||||| Sbjct 1968 AAATTTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGATAGGCGGGGATACT 1909 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 1908 CACCACTATACTGACGAGGA 1889 >seq34451 Length=11587 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | |||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 9755 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 9814 Query 57067 TACTA 57071 ||||| Sbjct 9815 TACTA 9819 >seq18185 Length=137282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 65513 CTCCCCGTCAGGGAATCGAACCCTGGTCTCTCGCGTGACAGGCAGGGATACTCACCACTA 65572 Query 57067 TACTACCGAGGA-TTGA 57082 || || ||| || |||| Sbjct 65573 TAGTAACGAAGACTTGA 65589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542557440917440