Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq60294 86.0 7e-12
seq27000 86.0 7e-12
seq34451 82.4 8e-11
seq18185 82.4 8e-11
>seq60294
Length=274
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || || | ||||| ||||||||||||| |||||||||||| ||| |||||||||
Sbjct 16 CTCCCCGTCAGGGAATCGTACCCTGGTCTCCCACGTGACAGGCGGGGATAATCACCACTA 75
Query 57067 TACTACCGAGGA-TTGA 57082
||||| |||||| ||||
Sbjct 76 TACTAACGAGGACTTGA 92
>seq27000
Length=4504
Score = 86.0 bits (94), Expect = 7e-12
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
||| |||||||| || | | ||| |||||| |||||||||||||| |||||| |||||
Sbjct 1968 AAATTTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGATAGGCGGGGATACT 1909
Query 57059 CACCACTATACTACCGAGGA 57078
|||||||||||| ||||||
Sbjct 1908 CACCACTATACTGACGAGGA 1889
>seq34451
Length=11587
Score = 82.4 bits (90), Expect = 8e-11
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || || | |||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 9755 CTCCCCGTCAGGGAATCGAACCCTGGTCTCCTGCGTGACAGGCAGGGATACTCACCACTA 9814
Query 57067 TACTA 57071
|||||
Sbjct 9815 TACTA 9819
>seq18185
Length=137282
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || || | ||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 65513 CTCCCCGTCAGGGAATCGAACCCTGGTCTCTCGCGTGACAGGCAGGGATACTCACCACTA 65572
Query 57067 TACTACCGAGGA-TTGA 57082
|| || ||| || ||||
Sbjct 65573 TAGTAACGAAGACTTGA 65589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542557440917440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |