Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4461 104 2e-17 seq8880 84.2 2e-11 >seq4461 Length=101207 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||||||||| |||| ||| ||||| ||||||||||||||||||||||||| || || Sbjct 14529 CAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCCCA 14588 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACC 95169 |||||| |||||||||||||| |||| ||| |||| Sbjct 14589 GATCCTGGGCAACAACGAGTCCATCGAGGCCTACACC 14625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || || | | || || ||| | |||||| | | ||| Sbjct 12903 GTCATGTTCGATAAAATCACCTCCCGGATCCAGAAGCTCTGCTACGGTCTGAATGCAGAC 12962 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 ||||||||||| | | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 12963 TTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 13022 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || ||||| || || || ||||||| ||| | ||| || || |||||| Sbjct 13023 ACCGTGGAGCTAGACACGCTAGCGGCGGAGATCACGGCCACCCTGACGACCAAGCACCCG 13082 Query 93511 GACTACTCCAT 93521 |||||| |||| Sbjct 13083 GACTACGCCAT 13093 >seq8880 Length=69162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 94172 AGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACC 94231 |||| |||| ||||| || | |||||||||||||| |||||| | || | || | Sbjct 11513 AGGGGCCTTT-GCGGTGTACTTGGAGCCCTGGCACGCTGACGTGTTTGAGTTTTTGGAGC 11455 Query 94232 TGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 || |||||| || || || | |||||||||||||| | |||| ||| | ||| Sbjct 11454 TGAAGAAGAACACGGGTAAAGAAGAGCAGAGGGCCAGAGACTTGTTCTTCGCCTTATGGA 11395 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | |||||||| ||||||||||| || || Sbjct 11394 TTCCAGACCTCTTTATGAAACGAGTGGA 11367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494126341195360