Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 104 2e-17
seq8880 84.2 2e-11
>seq4461
Length=101207
Score = 104 bits (114), Expect = 2e-17
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132
||||||||| |||| ||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 14529 CAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGGCCTCCACCGCCCA 14588
Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACC 95169
|||||| |||||||||||||| |||| ||| ||||
Sbjct 14589 GATCCTGGGCAACAACGAGTCCATCGAGGCCTACACC 14625
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390
||||||||||| || ||||| || || | | || || ||| | |||||| | | |||
Sbjct 12903 GTCATGTTCGATAAAATCACCTCCCGGATCCAGAAGCTCTGCTACGGTCTGAATGCAGAC 12962
Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450
||||||||||| | | || ||||||||| |||| ||||| | || ||| |||||
Sbjct 12963 TTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 13022
Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510
|| || ||||| || || || ||||||| ||| | ||| || || ||||||
Sbjct 13023 ACCGTGGAGCTAGACACGCTAGCGGCGGAGATCACGGCCACCCTGACGACCAAGCACCCG 13082
Query 93511 GACTACTCCAT 93521
|||||| ||||
Sbjct 13083 GACTACGCCAT 13093
>seq8880
Length=69162
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/148 (73%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 94172 AGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACC 94231
|||| |||| ||||| || | |||||||||||||| |||||| | || | || |
Sbjct 11513 AGGGGCCTTT-GCGGTGTACTTGGAGCCCTGGCACGCTGACGTGTTTGAGTTTTTGGAGC 11455
Query 94232 TGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291
|| |||||| || || || | |||||||||||||| | |||| ||| | |||
Sbjct 11454 TGAAGAAGAACACGGGTAAAGAAGAGCAGAGGGCCAGAGACTTGTTCTTCGCCTTATGGA 11395
Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319
| |||||||| ||||||||||| || ||
Sbjct 11394 TTCCAGACCTCTTTATGAAACGAGTGGA 11367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494126341195360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |