Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4461 120 3e-22 >seq4461 Length=101207 Score = 120 bits (132), Expect = 3e-22 Identities = 431/673 (64%), Gaps = 18/673 (3%) Strand=Plus/Minus Query 153077 GCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGG 153136 ||| ||| | | || | ||| ||||| ||||| || || || || |||| || || || Sbjct 14628 GCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGG 14569 Query 153137 CATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGC 153196 |||| |||| || || |||| || |||||| || | ||||||| | Sbjct 14568 CATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAG 14509 Query 153197 CTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCG 153256 || ||| ||||||| | | ||| ||| | ||||||||||||||| | | ||| Sbjct 14508 CTTCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTT 14449 Query 153257 ACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGCAGC 153315 ||| | || ||| || |||| ||| || || || ||||||||||||| Sbjct 14448 GCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAGC 14390 Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375 | ||||| || ||| | ||||| || || ||| ||| || | ||||| | |||| Sbjct 14389 TGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTT 14330 Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435 | ||| ||| |||| |||| ||| | |||||||| |||| |||||||| || | Sbjct 14329 CGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAA 14270 Query 153436 CGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGC-GCT--CGCTATGGGATAGTGAT 153492 |||||||| || || | ||| || |||| | ||| | || ||| |||| | Sbjct 14269 TCCCGATGGGCCGGTGGCGC---TTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGT 14213 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || || || || ||||| ||||| ||| | ||| || || | || || |||| Sbjct 14212 TGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCT 14153 Query 153553 CGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGA 153611 || ||| | ||| || | |||| ||| | || | ||| || || ||||| Sbjct 14152 TAAAGTCAAAAGTC----CGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGG 14097 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC-----GATCTCGGCGCAGAGGT 153666 |||||||| ||| ||| || | | |||||| ||| Sbjct 14096 TTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNN 14037 Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726 |||||| || ||| |||| || ||||| ||||| || | |||||| ||||||||| Sbjct 14036 NGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGT 13977 Query 153727 AGAGCATGTACGG 153739 |||||||||| || Sbjct 13976 AGAGCATGTAGGG 13964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 230/349 (66%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 154194 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 ||||| || ||||| || | || || ||| ||||| | ||| || ||||||| Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || |||||||| || || | | |||||| ||| || ||| ||||| | Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 13458 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 || || || |||||||| || ||||| || ||| || | || || | | Sbjct 13457 GTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTG 13398 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || || || |||||| | || || || || ||||| || |||| || || | ||||||| Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493 ||||||||||| || ||||| ||| | || ||||||| ||||| || ||| Sbjct 13337 ATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGG 13278 Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGG 154542 |||||| | || || | ||||| ||||||| |||| | ||||| Sbjct 13277 GTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 13229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495663684227520