Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 120 3e-22
>seq4461
Length=101207
Score = 120 bits (132), Expect = 3e-22
Identities = 431/673 (64%), Gaps = 18/673 (3%)
Strand=Plus/Minus
Query 153077 GCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGG 153136
||| ||| | | || | ||| ||||| ||||| || || || || |||| || || ||
Sbjct 14628 GCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGG 14569
Query 153137 CATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGC 153196
|||| |||| || || |||| || |||||| || | ||||||| |
Sbjct 14568 CATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAG 14509
Query 153197 CTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCG 153256
|| ||| ||||||| | | ||| ||| | ||||||||||||||| | | |||
Sbjct 14508 CTTCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTT 14449
Query 153257 ACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGCAGC 153315
||| | || ||| || |||| ||| || || || |||||||||||||
Sbjct 14448 GCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAGC 14390
Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375
| ||||| || ||| | ||||| || || ||| ||| || | ||||| | ||||
Sbjct 14389 TGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTT 14330
Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435
| ||| ||| |||| |||| ||| | |||||||| |||| |||||||| || |
Sbjct 14329 CGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAA 14270
Query 153436 CGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGC-GCT--CGCTATGGGATAGTGAT 153492
|||||||| || || | ||| || |||| | ||| | || ||| |||| |
Sbjct 14269 TCCCGATGGGCCGGTGGCGC---TTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGT 14213
Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552
|| || || || ||||| ||||| ||| | ||| || || | || || ||||
Sbjct 14212 TGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCT 14153
Query 153553 CGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGA 153611
|| ||| | ||| || | |||| ||| | || | ||| || || |||||
Sbjct 14152 TAAAGTCAAAAGTC----CGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGG 14097
Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC-----GATCTCGGCGCAGAGGT 153666
|||||||| ||| ||| || | | |||||| |||
Sbjct 14096 TTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNN 14037
Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726
|||||| || ||| |||| || ||||| ||||| || | |||||| |||||||||
Sbjct 14036 NGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGT 13977
Query 153727 AGAGCATGTACGG 153739
|||||||||| ||
Sbjct 13976 AGAGCATGTAGGG 13964
Score = 93.3 bits (102), Expect = 4e-14
Identities = 230/349 (66%), Gaps = 0/349 (0%)
Strand=Plus/Minus
Query 154194 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253
||||| || ||||| || | || || ||| ||||| | ||| || |||||||
Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518
Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313
|| |||||||| || || | | |||||| ||| || ||| ||||| |
Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 13458
Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373
|| || || |||||||| || ||||| || ||| || | || || | |
Sbjct 13457 GTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTG 13398
Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433
|| || || |||||| | || || || || ||||| || |||| || || | |||||||
Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338
Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493
||||||||||| || ||||| ||| | || ||||||| ||||| || |||
Sbjct 13337 ATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGG 13278
Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGG 154542
|||||| | || || | ||||| ||||||| |||| | |||||
Sbjct 13277 GTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 13229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495663684227520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |