Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4461 96.9 3e-15 seq8880 86.0 6e-12 >seq4461 Length=101207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 232/349 (66%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 123924 CAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAG 123983 || || ||||| ||||| || | || |||| |||| ||||||| |||||| | Sbjct 14278 CAGGGTTTGGCAGACGCCTTCATCCTGATGCGTTATCCGTTCGAAAGCCCCGAAGCTCAA 14337 Query 123984 TTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAA 124043 |||| || | || || ||| ||||| || |||| ||| ||||||| ||||||||| Sbjct 14338 CTGCTCAACATTCACATCTTCGAGACAATCTACTACGCCGCCCTGGAGGCCAGCTGCGAA 14397 Query 124044 CTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATT 124103 || ||| | | || | ||||| | || | ||| || | ||| ||| || Sbjct 14398 CTGGCGGCAGAGCTGGGTCCTTACGAGACGTATGAAGGCTCACCTGTCAGCAAAGGCATC 14457 Query 124104 TTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAA 124163 | ||||||||||||||| | || ||||| | |||||||||||| | | || Sbjct 14458 CTCCAGTACGACATGTGGGAGAAGACTCCGACCGACATGTGGGACTGGAAGCTGCTGAAG 14517 Query 124164 CAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGG 124221 | | | |||| | ||||| || | ||| ||| || |||| |||||| |||| Sbjct 14518 GA--GAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGG 14575 Query 124222 CAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 | |||| || || || | || |||||||| ||| ||||| | | ||| Sbjct 14576 CCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 14624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 |||||||| ||||| |||||||||||||||||||||||||| ||||| | ||| ||| Sbjct 13952 GAAACCGGGACGCCCTACATGCTCTACAAAGACGCCTGCAATAGGAAGAGCAACCAGCAG 14011 Query 123666 AACTTGGGAACAATAAAATGTAG 123688 ||| |||| || || || || || Sbjct 14012 AACCTGGGTACCATCAAGTGCAG 14034 >seq8880 Length=69162 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || || |||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 11010 GAGACAGGTACTCCCTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 10951 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 || |||| || || |||| || ||||| ||| | ||||| | ||||| Sbjct 10950 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAAATAGTAGAATA 10901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451457880739360