Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 96.9 3e-15
seq8880 86.0 6e-12
>seq4461
Length=101207
Score = 96.9 bits (106), Expect = 3e-15
Identities = 232/349 (66%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 123924 CAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAG 123983
|| || ||||| ||||| || | || |||| |||| ||||||| |||||| |
Sbjct 14278 CAGGGTTTGGCAGACGCCTTCATCCTGATGCGTTATCCGTTCGAAAGCCCCGAAGCTCAA 14337
Query 123984 TTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAA 124043
|||| || | || || ||| ||||| || |||| ||| ||||||| |||||||||
Sbjct 14338 CTGCTCAACATTCACATCTTCGAGACAATCTACTACGCCGCCCTGGAGGCCAGCTGCGAA 14397
Query 124044 CTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATT 124103
|| ||| | | || | ||||| | || | ||| || | ||| ||| ||
Sbjct 14398 CTGGCGGCAGAGCTGGGTCCTTACGAGACGTATGAAGGCTCACCTGTCAGCAAAGGCATC 14457
Query 124104 TTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAA 124163
| ||||||||||||||| | || ||||| | |||||||||||| | | ||
Sbjct 14458 CTCCAGTACGACATGTGGGAGAAGACTCCGACCGACATGTGGGACTGGAAGCTGCTGAAG 14517
Query 124164 CAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGG 124221
| | | |||| | ||||| || | ||| ||| || |||| |||||| ||||
Sbjct 14518 GA--GAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCCCCCATGCCCACGG 14575
Query 124222 CAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270
| |||| || || || | || |||||||| ||| ||||| | | |||
Sbjct 14576 CCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 14624
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|||||||| ||||| |||||||||||||||||||||||||| ||||| | ||| |||
Sbjct 13952 GAAACCGGGACGCCCTACATGCTCTACAAAGACGCCTGCAATAGGAAGAGCAACCAGCAG 14011
Query 123666 AACTTGGGAACAATAAAATGTAG 123688
||| |||| || || || || ||
Sbjct 14012 AACCTGGGTACCATCAAGTGCAG 14034
>seq8880
Length=69162
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| || || || || |||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 11010 GAGACAGGTACTCCCTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 10951
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715
|| |||| || || |||| || ||||| ||| | ||||| | |||||
Sbjct 10950 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAAATAGTAGAATA 10901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451457880739360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |