Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 113 6e-20
seq8880 98.7 1e-15
seq82826 91.5 2e-13
seq4859 91.5 2e-13
>seq4461
Length=101207
Score = 113 bits (124), Expect = 6e-20
Identities = 156/214 (73%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120
||||||| | | || || ||||||| || ||||| |||| |||| | |||| |||
Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485
Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178
|||||||| |||| || |||| ||| || || ||||||||||||||||| | ||||
Sbjct 13484 AAGCAGCTGGACAGCTGCGGCC--GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGT 13427
Query 117179 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237
|| ||||| || | | |||| | | ||||||||| | | | | |||||||||
Sbjct 13426 GGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCT 13368
Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGT 117271
||||| ||||||| || |||| ||| | |||||
Sbjct 13367 CCGTGGATACCGACCGACACCCTCATGAGCATGT 13334
>seq8880
Length=69162
Score = 98.7 bits (108), Expect = 1e-15
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||| | | ||||||||||||||| ||| ||||| |||||
Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
||||||||||| || |||| |||||||||||
Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412
>seq82826
Length=583
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||| ||| || ||||| || || || ||||
Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||||| || || ||| ||||||||||||||||| |||||||| |||||||
Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145
Query 127659 CAAATAGACGCTC 127671
| | | ||||||
Sbjct 144 CCACCACACGCTC 132
>seq4859
Length=382710
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611
|||||||||||| |||||| || || ||||| || || | |||||| | |||| | ||
Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864
Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671
||| ||||||||| ||||||||||||||||| ||| || || || | || |||||
Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612767034238560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |