Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4461 113 6e-20 seq8880 98.7 1e-15 seq82826 91.5 2e-13 seq4859 91.5 2e-13 >seq4461 Length=101207 Score = 113 bits (124), Expect = 6e-20 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 ||||||| | | || || ||||||| || ||||| |||| |||| | |||| ||| Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485 Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||||||| |||| || |||| ||| || || ||||||||||||||||| | |||| Sbjct 13484 AAGCAGCTGGACAGCTGCGGCC--GGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGT 13427 Query 117179 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || ||||| || | | |||| | | ||||||||| | | | | ||||||||| Sbjct 13426 GGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCT 13368 Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 ||||| ||||||| || |||| ||| | ||||| Sbjct 13367 CCGTGGATACCGACCGACACCCTCATGAGCATGT 13334 >seq8880 Length=69162 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| ||||||||||| Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412 >seq82826 Length=583 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 144 CCACCACACGCTC 132 >seq4859 Length=382710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 |||||||||||| |||||| || || ||||| || || | |||||| | |||| | || Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| ||||||||| ||||||||||||||||| ||| || || || | || ||||| Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612767034238560