Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4461 118 2e-21 seq8880 104 4e-17 >seq4461 Length=101207 Score = 118 bits (130), Expect = 2e-21 Identities = 196/283 (69%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 204237 TGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCA 204296 ||||| | | |||| | |||||||||||| | ||||| |||||| ||||||||||| Sbjct 14626 TGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCA 14567 Query 204297 TGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGG 204356 |||| ||||| |||||| ||| | ||| |||| ||| || | | |||||| Sbjct 14566 TGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCT 14507 Query 204357 TCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGAC 204416 ||||||| ||| | | || || ||||||||||| |||| | |||||||| | Sbjct 14506 TCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 14447 Query 204417 TGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGG 204476 |||| || ||| | |||||| ||||| |||| | ||||| | ||| || Sbjct 14446 TGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGG 14387 Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 | ||| |||| ||||| || ||||| ||||| |||| ||| Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTT 14344 Score = 111 bits (122), Expect = 2e-19 Identities = 276/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 205346 TTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCC 205405 ||| |||| ||||||||||| ||||| || |||| | | ||||| |||| | |||| Sbjct 13667 TTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATG--- 13611 Query 205406 GAGCCTTCAGCC---CTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462 ||| ||| | || | | | | ||| |||| |||||||||| | |||| Sbjct 13610 TAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAA 13551 Query 205463 ATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 || ||||||||| | ||| ||| ||||||||| ||||| || ||| || | Sbjct 13550 ATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCG 13491 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 | ||| |||| | ||||| | |||||| || |||| |||||| || || | Sbjct 13490 AGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAG 13431 Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCG 205642 |||||| |||| | |||||| || |||||||||| | || || | || Sbjct 13430 GCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCT 13371 Query 205643 AAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTC 205702 ||||| ||||| | | | |||||||| | ||| || || | ||| ||| || Sbjct 13370 TCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTC 13311 Query 205703 TCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 |||| | ||| |||||||||| | ||| ||||| || | |||| |||||| ||| Sbjct 13310 CCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGG 13253 >seq8880 Length=69162 Score = 104 bits (114), Expect = 4e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| || ||||||| |||||| || || |||||||| Sbjct 8350 CTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGTGAAT 8409 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| |||||||| || || |||||| ||| | |||||||| ||||| |||| | || Sbjct 8410 GTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGT 8469 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || ||||| || || || Sbjct 8470 CTTCTGGGAGATTTCCCAAACTGTTTT 8496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794195885008960