Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 118 2e-21
seq8880 104 4e-17
>seq4461
Length=101207
Score = 118 bits (130), Expect = 2e-21
Identities = 196/283 (69%), Gaps = 0/283 (0%)
Strand=Plus/Minus
Query 204237 TGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCA 204296
||||| | | |||| | |||||||||||| | ||||| |||||| |||||||||||
Sbjct 14626 TGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCA 14567
Query 204297 TGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGG 204356
|||| ||||| |||||| ||| | ||| |||| ||| || | | ||||||
Sbjct 14566 TGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCT 14507
Query 204357 TCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGAC 204416
||||||| ||| | | || || ||||||||||| |||| | |||||||| |
Sbjct 14506 TCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 14447
Query 204417 TGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGG 204476
|||| || ||| | |||||| ||||| |||| | ||||| | ||| ||
Sbjct 14446 TGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGG 14387
Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519
| ||| |||| ||||| || ||||| ||||| |||| |||
Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTT 14344
Score = 111 bits (122), Expect = 2e-19
Identities = 276/418 (66%), Gaps = 6/418 (1%)
Strand=Plus/Minus
Query 205346 TTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCC 205405
||| |||| ||||||||||| ||||| || |||| | | ||||| |||| | ||||
Sbjct 13667 TTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATG--- 13611
Query 205406 GAGCCTTCAGCC---CTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462
||| ||| | || | | | | ||| |||| |||||||||| | ||||
Sbjct 13610 TAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAA 13551
Query 205463 ATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522
|| ||||||||| | ||| ||| ||||||||| ||||| || ||| || |
Sbjct 13550 ATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCG 13491
Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582
| ||| |||| | ||||| | |||||| || |||| |||||| || || |
Sbjct 13490 AGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAG 13431
Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCG 205642
|||||| |||| | |||||| || |||||||||| | || || | ||
Sbjct 13430 GCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCT 13371
Query 205643 AAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTC 205702
||||| ||||| | | | |||||||| | ||| || || | ||| ||| ||
Sbjct 13370 TCTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACTTTC 13311
Query 205703 TCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760
|||| | ||| |||||||||| | ||| ||||| || | |||| |||||| |||
Sbjct 13310 CCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGG 13253
>seq8880
Length=69162
Score = 104 bits (114), Expect = 4e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973
|| ||| ||||| | ||||||| || ||||||| |||||| || || ||||||||
Sbjct 8350 CTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGTGAAT 8409
Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033
||| |||||||| || || |||||| ||| | |||||||| ||||| |||| | ||
Sbjct 8410 GTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGT 8469
Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060
|||||| || || ||||| || || ||
Sbjct 8470 CTTCTGGGAGATTTCCCAAACTGTTTT 8496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794195885008960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |