Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq82826 129 6e-25
seq1817 100 3e-16
seq4859 89.7 5e-13
>seq82826
Length=583
Score = 129 bits (142), Expect = 6e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| ||| ||||| ||||||||||| |||| ||||||||| ||||||||||| |
Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||| || |||||||| || ||| || ||||||| ||||| ||||| ||||| |
Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145
Query 133037 CCACCAGGCGCTCGCC 133052
|||||| ||||| ||
Sbjct 144 CCACCACACGCTCTCC 129
>seq1817
Length=35134
Score = 100 bits (110), Expect = 3e-16
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
|||||||| ||||||||||||||||||||||||||||| || |||| |||| | ||||
Sbjct 4095 ACCAGATTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAAAACGTACGAGATG 4154
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397
|| || |||||| | | || || | |||||||| || ||| |||||||| |||||
Sbjct 4155 AAGTGACGCTCG-TCTGATTTGAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGATCCAC 4213
Query 133398 CT 133399
||
Sbjct 4214 CT 4215
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
|| |||||| |||||||| ||| ||| || | ||||||||| ||||| | || ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| | ||||| || || ||| || ||||||| ||||| || || || ||||||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 133039 ACCAGGCGCTCGCC 133052
||||| ||||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499569366525440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |