Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq82826 129 6e-25 seq1817 100 3e-16 seq4859 89.7 5e-13 >seq82826 Length=583 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| ||||||||| ||||||||||| | Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || ||| || ||||||| ||||| ||||| ||||| | Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 144 CCACCACACGCTCTCC 129 >seq1817 Length=35134 Score = 100 bits (110), Expect = 3e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||||||| ||||||||||||||||||||||||||||| || |||| |||| | |||| Sbjct 4095 ACCAGATTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAAAACGTACGAGATG 4154 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || || |||||| | | || || | |||||||| || ||| |||||||| ||||| Sbjct 4155 AAGTGACGCTCG-TCTGATTTGAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGATCCAC 4213 Query 133398 CT 133399 || Sbjct 4214 CT 4215 >seq4859 Length=382710 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 || |||||| |||||||| ||| ||| || | ||||||||| ||||| | || || Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| | ||||| || || ||| || ||||||| ||||| || || || |||||| Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815 Query 133039 ACCAGGCGCTCGCC 133052 ||||| ||||| || Sbjct 368814 ACCAGTCGCTCCCC 368801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499569366525440