Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 170 8e-37
seq4638 89.7 2e-12
seq723 87.8 7e-12
>seq7764
Length=261495
Score = 170 bits (188), Expect = 8e-37
Identities = 458/692 (66%), Gaps = 9/692 (1%)
Strand=Plus/Plus
Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976
||||| || ||||| || ||||||| || ||||| || |||| ||| ||||||| ||
Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880
Query 450977 GAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035
||||| || | || || ||||| | || || | |||||| | || ||||| ||
Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGA-CAACTCCTAGCTATGTTGCCTTTACTGA 207939
Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094
|||| ||||| | || | |||||||| | | | | | | || ||| |||||
Sbjct 207940 CACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACC-CCACAAACA 207998
Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154
| || | |||||| ||||| | ||||| | | | |||||| || |||| |
Sbjct 207999 CTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAGTG 208058
Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAA 451214
| | ||| ||| | | | || || ||| | || || |||||| | | || ||
Sbjct 208059 ACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTCCAGGTGG 208118
Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274
| ||||| || ||||| || ||||| |||||| || ||||| || ||||| || ||
Sbjct 208119 AATATAAGGGAGAAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGGTCCTGGTTA 208178
Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATTACT 451333
|||||| ||||| ||| || | | |||| | | || || || || || ||
Sbjct 208179 AAATGAGAGAAATAGCTGAGGCCTTT-TTGGGACAGAGGGTATCGAATGTGGTCATCACA 208237
Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393
||||| ||||| || || ||| | || ||||||| || || ||||| ||| || |
Sbjct 208238 GTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGAGTCATCTCG 208297
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453
|| |||||||||| || || || ||||| || |||||||| || | || ||||| ||
Sbjct 208298 GGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCCTATGGCCTG 208357
Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
| ||| ||| | || ||| || || | | |||||| | |||||||| |||
Sbjct 208358 GATAAAGGTAAA---AGAGGAGAGCGCAACGTTCTCATCTTTGATCTAGGTGGAGGCACT 208414
Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573
||| || | || | ||||||||||| ||||||| ||||| || || ||
Sbjct 208415 TTTGACGTGTCAATCCTGACCATTGAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGG 208474
Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || || || || || || || |||| ||
Sbjct 208475 GACACACACCTCGGTGGGGAGGACTTTGACAA 208506
>seq4638
Length=22294
Score = 89.7 bits (98), Expect = 2e-12
Identities = 140/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289
|||||||||| | || ||||| ||||||||||| ||||| ||||| | |
Sbjct 5784 TGAAGGAGAAAGAGCCATGACTAAAGATAATAATATCTTAGGAAAATTTGAATTGACCGG 5725
Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349
|||||| ||| | ||||| ||| ||| || || || | |||| ||| | || || ||
Sbjct 5724 CATTCCACCTGTCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGACGCTAA 5665
Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACA 452407
||| |||||||||||| ||| || || |||| || |||| || |||| ||||| ||
Sbjct 5664 TGGCATTCTTAATGTGTCTGCGGTCGACAAAAGCA-CTGG-GAAGGAGAATAAAATCACC 5607
Query 452408 ATTACTAATGATAAA 452422
|| || ||||| |||
Sbjct 5606 ATCACCAATGACAAA 5592
>seq723
Length=186438
Score = 87.8 bits (96), Expect = 7e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || | ||||| ||||| ||||||||||| | || || || || || |||||||
Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
| || || |||| | ||||| || |||||||||||||| || ||||| |||||
Sbjct 37938 CTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCCA 37879
Query 451440 TAGCATATGGACT 451452
| || ||||| ||
Sbjct 37878 TCGCTTATGGCCT 37866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1973275204399728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |