Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7764 170 8e-37 seq4638 89.7 2e-12 seq723 87.8 7e-12 >seq7764 Length=261495 Score = 170 bits (188), Expect = 8e-37 Identities = 458/692 (66%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || ||||| || ||||||| || ||||| || |||| ||| ||||||| || Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880 Query 450977 GAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 ||||| || | || || ||||| | || || | |||||| | || ||||| || Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGA-CAACTCCTAGCTATGTTGCCTTTACTGA 207939 Query 451036 TTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACA 451094 |||| ||||| | || | |||||||| | | | | | | || ||| ||||| Sbjct 207940 CACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACC-CCACAAACA 207998 Query 451095 CAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAG 451154 | || | |||||| ||||| | ||||| | | | |||||| || |||| | Sbjct 207999 CTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAGTG 208058 Query 451155 AGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAA 451214 | | ||| ||| | | | || || ||| | || || |||||| | | || || Sbjct 208059 ACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTCCAGGTGG 208118 Query 451215 ATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTA 451274 | ||||| || ||||| || ||||| |||||| || ||||| || ||||| || || Sbjct 208119 AATATAAGGGAGAAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGGTCCTGGTTA 208178 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATTACT 451333 |||||| ||||| ||| || | | |||| | | || || || || || || Sbjct 208179 AAATGAGAGAAATAGCTGAGGCCTTT-TTGGGACAGAGGGTATCGAATGTGGTCATCACA 208237 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| || || ||| | || ||||||| || || ||||| ||| || | Sbjct 208238 GTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGAGTCATCTCG 208297 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || |||||||||| || || || ||||| || |||||||| || | || ||||| || Sbjct 208298 GGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCCTATGGCCTG 208357 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||| ||| | || ||| || || | | |||||| | |||||||| ||| Sbjct 208358 GATAAAGGTAAA---AGAGGAGAGCGCAACGTTCTCATCTTTGATCTAGGTGGAGGCACT 208414 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| || | || | ||||||||||| ||||||| ||||| || || || Sbjct 208415 TTTGACGTGTCAATCCTGACCATTGAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGG 208474 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || || || |||| || Sbjct 208475 GACACACACCTCGGTGGGGAGGACTTTGACAA 208506 >seq4638 Length=22294 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||||||| | || ||||| ||||||||||| ||||| ||||| | | Sbjct 5784 TGAAGGAGAAAGAGCCATGACTAAAGATAATAATATCTTAGGAAAATTTGAATTGACCGG 5725 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 |||||| ||| | ||||| ||| ||| || || || | |||| ||| | || || || Sbjct 5724 CATTCCACCTGTCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGACGCTAA 5665 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACA 452407 ||| |||||||||||| ||| || || |||| || |||| || |||| ||||| || Sbjct 5664 TGGCATTCTTAATGTGTCTGCGGTCGACAAAAGCA-CTGG-GAAGGAGAATAAAATCACC 5607 Query 452408 ATTACTAATGATAAA 452422 || || ||||| ||| Sbjct 5606 ATCACCAATGACAAA 5592 >seq723 Length=186438 Score = 87.8 bits (96), Expect = 7e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||| ||||| ||||||||||| | || || || || || ||||||| Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || |||| | ||||| || |||||||||||||| || ||||| ||||| Sbjct 37938 CTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCCA 37879 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 37878 TCGCTTATGGCCT 37866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973275204399728