Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7764 248 7e-60 seq4638 89.7 4e-12 seq90704 87.8 1e-11 seq723 86.0 5e-11 >seq7764 Length=261495 Score = 248 bits (274), Expect = 7e-60 Identities = 969/1507 (64%), Gaps = 20/1507 (1%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| || || || || |||| || ||| || | |||| |||||| || Sbjct 209317 ATTGGTAATTGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCCACAGCAGACACATTTAG 209258 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||||| ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 209257 GATACCATTGGTATCTATGTCAAAGGTGACCTCTATCTGTGGCACACCTCTGGGAGCAGG 209198 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||| ||| | | ||| |||| || ||| || || || || | || ||| Sbjct 209197 CGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTGGTCATGGCTCTTTC 209138 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||| || | | || || ||| | | || ||||| || || || | || | ||| Sbjct 209137 ACCTTCATACACCTGAATCAGGACTCCTGGCTGGTTATCAGAGTATGTGGAGAAGA-TCT 209079 Query 517453 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | | || || || || ||||| | | |||| ||||||| |||||| | Sbjct 209078 GAGTCTGCTTTGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTCATAACACCACCAG 209019 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 |||| || | || ||||| | || | || || | || | | || ||| | || | Sbjct 209018 CTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAATCTTGGACATTCT 208959 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 | || | || | || ||||| || || | || ||||| || || || ||||||| Sbjct 208958 CTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAGGCTACTGCTTCAT 208899 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 517690 |||| || | | | | || || | | |||||||||| |||| || || | ||| Sbjct 208898 CAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGTAGGAGCT-TCTGG 208840 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 | || || || | | || || |||||||| ||||||||||| | || ||||||||| Sbjct 208839 ATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATCTTGGATTTATCC 208780 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 ||||| | ||| || |||||||| || || || | || || | ||| || Sbjct 208779 AGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGGGTTCCCCTGAAGAGGTCAGAG 208720 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 517868 ||||| || || || || || || ||| | || || ||||| || || |||| Sbjct 208719 TTTAGTTCCTCAAAGCGTGCCCTTGT--GATTGATGTGTAAAAGTCAATCCCCTCAAACA 208662 Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 || |||| ||||| | | |||| || || | || | || || | |||| Sbjct 208661 GTGAGTCAATCTCAATGCTGGCCCGAGTGCTGGAGGACAATGTTCTCTTTGCTCTCTCAC 208602 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTT 517986 | || || | ||||| | | ||| | || ||| | | | ||| | |||| ||| Sbjct 208601 AGGCCGTGCGGAGTCTCCTCACTGCTCT--CTTATTCTGGCTGATATCCTTCTTATGTTT 208544 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 ||| ||||| || || ||| | | || | | || ||||| || || || || | Sbjct 208543 TCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCCCCACCGAG 208484 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | || | |||| || ||| |||| | || | |||||||||| | || | | Sbjct 208483 GTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTCAGGATTGA 208424 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 || ||| || || ||||| | |||||| || || || || ||| |||| || Sbjct 208423 CACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACGTTGCGCTCTCC-TCTT--TT 208367 Query 518167 ---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 |||||| || ||||| |||| || || || || || ||||| || || | || ||| Sbjct 208366 ACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACGCAGAAC 208307 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||| || || | || ||| ||||| || |||||||| || || ||||||||||| || Sbjct 208306 ATTTAGTCCCGAGATGACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTTAAAGTA 208247 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 || ||||| || || || ||| | || | ||| | |||| | | || || ||| Sbjct 208246 AGCTGGAACTGTGATGACCACATTCGATACCCTCTGTCCCAA-AAAGGCCTCAGCTATTT 208188 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCAT 518402 | |||||||| | | |||||| ||||| | || || | | ||| | ||| Sbjct 208187 CTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTTGTTTCTC 208128 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGT 518462 | |||| || | | | || || | |||| | || || || |||||| Sbjct 208127 CCTTATATTCCACCTGGACTTTGGGCTTCCCATTGTCATTGACCACCTTGAAGGGCCAGA 208068 Query 518463 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 518522 |||||| || |||||| | |||||| ||| ||| ||||| | ||||| |||| Sbjct 208067 GTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCCGTTTGGCAT 208008 Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | ||| || || || || || ||| |||| | || || |||||||| || || Sbjct 208007 CAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTCCGATGAGTC 207948 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || ||||| | |||||| |||||||| | || |||||||| || | | Sbjct 207947 TCTCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTTGATCGTTGGTGA 207888 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| ||||| |||| || | || || |||||| | || || || | ||| | Sbjct 207887 TGATTTCCACTTTTCCATGCTGGAAAACCCCGACACAAGAGTAGGTGGTGCCCAGATCGA 207828 Query 518703 TACCAAT 518709 | ||||| Sbjct 207827 TGCCAAT 207821 >seq4638 Length=22294 Score = 89.7 bits (98), Expect = 4e-12 Identities = 350/543 (64%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 || ||||| ||||| || ||||||||||||| | | |||| | |||||| || Sbjct 7191 GCCCCATAAGCAACGGCCTCATCAGGATTAATGCTCTTGTTTAAGTCACGACCATTAAAC 7250 Query 517670 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 || | | ||||| | | || ||| |||||||| | || || || |||| ||||| Sbjct 7251 AAGTCTTGCAGAAGCTTTTGTATCTTTGGAATACGTGTGGAGCCACCCACTAGAACAATA 7310 Query 517730 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 517789 ||||| | ||| |||||||| ||| | |||| | | ||||| || || |||||| Sbjct 7311 TCATGGATCTGGCCTTTATCCATTTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGA 7370 Query 517790 CCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-T 517848 ||| |||| ||||| | || ||||| || ||| || || || ||| | | Sbjct 7371 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGT--GATTGAGGTGT 7428 Query 517849 A-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 | |||| |||| || ||| || |||| ||||| | | || || | || | Sbjct 7429 AGAAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTACTGGAGA 7488 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGATTG 517965 | | || || || || ||||||||||| | || | |||| ||| ||| || ||| Sbjct 7489 GGGTGCGCTTGGCTCGCTCACATGCTGTACGCAGACGACGTACAGCTCGCTTGTTG-TTG 7547 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025 | | | || |||| |||| | || || ||| ||| | | | || | || || Sbjct 7548 A-TGATGTCCTTTTTGAATTTGCGTTTAAACTCTGCAATAAAGTGGTTAACCATGCGGTT 7606 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||||| || || |||||||| | || | || | || || | || | || | || Sbjct 7607 GTCAAAGTCCTCTCCTCCCAAGTGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCC 7666 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 ||| |||| || || | | |||||| |||||||| || | ||||| || || || Sbjct 7667 ATCCTCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGAC 7726 Query 518146 ATT 518148 ||| Sbjct 7727 ATT 7729 >seq90704 Length=938 Score = 87.8 bits (96), Expect = 1e-11 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGTTTTTATCAA 518174 ||| || || |||| || || || || || || | ||| || |||| ||| ||| | Sbjct 486 GGTGCCTCCGCCCAGGTCGAAGATCAGGACGTTTCTCTCTCCTGACTTGCCTTT-ATCCA 544 Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234 |||| ||||| | || || || || || || || || ||||||| || || || || | Sbjct 545 GACCGTACGCGATGGCGGCCGCCGTGGGCTCGTTGATGATTCTCAGGACGTTGAGTCCCG 604 Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294 |||| ||||| ||||||||||| |||| || || ||||| || || || || || | Sbjct 605 CAATGACGCCTGCGTCTTTAGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGCGGGGACCG 664 Query 518295 TAATAACGGCAT 518306 | || ||||||| Sbjct 665 TGATGACGGCAT 676 >seq723 Length=186438 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| || | |||||||| || || ||||||||||||| || ||| Sbjct 37857 TTTTTGTCGAGGCCATAAGCGATGGCAGCAGCTGTGGGCTCATTAATAATTCGCAGGACA 37916 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | || |||||||| || || || | || || || || ||||| Sbjct 37917 TTCAGCCCAGAGATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGGGAGTCATTGAAATAG 37976 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||| | || |||| Sbjct 37977 GCGGGTACAGTCACCACAGCAT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776032958156296