Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 248 7e-60
seq4638 89.7 4e-12
seq90704 87.8 1e-11
seq723 86.0 5e-11
>seq7764
Length=261495
Score = 248 bits (274), Expect = 7e-60
Identities = 969/1507 (64%), Gaps = 20/1507 (1%)
Strand=Plus/Minus
Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272
||| ||||| || || || || |||| || ||| || | |||| |||||| ||
Sbjct 209317 ATTGGTAATTGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCCACAGCAGACACATTTAG 209258
Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332
|||||||||| ||| | ||||| ||||| || || || || || ||||| |||||||
Sbjct 209257 GATACCATTGGTATCTATGTCAAAGGTGACCTCTATCTGTGGCACACCTCTGGGAGCAGG 209198
Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392
|||| ||| | | ||| |||| || ||| || || || || | || |||
Sbjct 209197 CGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTGGTCATGGCTCTTTC 209138
Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452
||| || | | || || ||| | | || ||||| || || || | || | |||
Sbjct 209137 ACCTTCATACACCTGAATCAGGACTCCTGGCTGGTTATCAGAGTATGTGGAGAAGA-TCT 209079
Query 517453 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511
| | | || || || || ||||| | | |||| ||||||| |||||| |
Sbjct 209078 GAGTCTGCTTTGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTCATAACACCACCAG 209019
Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571
|||| || | || ||||| | || | || || | || | | || ||| | || |
Sbjct 209018 CTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAATCTTGGACATTCT 208959
Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631
| || | || | || ||||| || || | || ||||| || || || |||||||
Sbjct 208958 CTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAGGCTACTGCTTCAT 208899
Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 517690
|||| || | | | | || || | | |||||||||| |||| || || | |||
Sbjct 208898 CAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGTAGGAGCT-TCTGG 208840
Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750
| || || || | | || || |||||||| ||||||||||| | || |||||||||
Sbjct 208839 ATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATCTTGGATTTATCC 208780
Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810
||||| | ||| || |||||||| || || || | || || | ||| ||
Sbjct 208779 AGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGGGTTCCCCTGAAGAGGTCAGAG 208720
Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 517868
||||| || || || || || || ||| | || || ||||| || || ||||
Sbjct 208719 TTTAGTTCCTCAAAGCGTGCCCTTGT--GATTGATGTGTAAAAGTCAATCCCCTCAAACA 208662
Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928
|| |||| ||||| | | |||| || || | || | || || | ||||
Sbjct 208661 GTGAGTCAATCTCAATGCTGGCCCGAGTGCTGGAGGACAATGTTCTCTTTGCTCTCTCAC 208602
Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTT 517986
| || || | ||||| | | ||| | || ||| | | | ||| | |||| |||
Sbjct 208601 AGGCCGTGCGGAGTCTCCTCACTGCTCT--CTTATTCTGGCTGATATCCTTCTTATGTTT 208544
Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046
||| ||||| || || ||| | | || | | || ||||| || || || || |
Sbjct 208543 TCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCCCCACCGAG 208484
Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106
| || | |||| || ||| |||| | || | |||||||||| | || | |
Sbjct 208483 GTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTCAGGATTGA 208424
Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166
|| ||| || || ||||| | |||||| || || || || ||| |||| ||
Sbjct 208423 CACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACGTTGCGCTCTCC-TCTT--TT 208367
Query 518167 ---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223
|||||| || ||||| |||| || || || || || ||||| || || | || |||
Sbjct 208366 ACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACGCAGAAC 208307
Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283
||| || || | || ||| ||||| || |||||||| || || ||||||||||| ||
Sbjct 208306 ATTTAGTCCCGAGATGACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTTAAAGTA 208247
Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTTACCAATATAAGCGCTTGCCGTTT 518342
|| ||||| || || || ||| | || | ||| | |||| | | || || |||
Sbjct 208246 AGCTGGAACTGTGATGACCACATTCGATACCCTCTGTCCCAA-AAAGGCCTCAGCTATTT 208188
Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCAT 518402
| |||||||| | | |||||| ||||| | || || | | ||| | |||
Sbjct 208187 CTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTTGTTTCTC 208128
Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGT 518462
| |||| || | | | || || | |||| | || || || ||||||
Sbjct 208127 CCTTATATTCCACCTGGACTTTGGGCTTCCCATTGTCATTGACCACCTTGAAGGGCCAGA 208068
Query 518463 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 518522
|||||| || |||||| | |||||| ||| ||| ||||| | ||||| ||||
Sbjct 208067 GTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCCGTTTGGCAT 208008
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||| | ||| || || || || || ||| |||| | || || |||||||| || ||
Sbjct 208007 CAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTCCGATGAGTC 207948
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
||||| || ||||| | |||||| |||||||| | || |||||||| || | |
Sbjct 207947 TCTCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTTGATCGTTGGTGA 207888
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| ||||| ||||| |||| || | || || |||||| | || || || | ||| |
Sbjct 207887 TGATTTCCACTTTTCCATGCTGGAAAACCCCGACACAAGAGTAGGTGGTGCCCAGATCGA 207828
Query 518703 TACCAAT 518709
| |||||
Sbjct 207827 TGCCAAT 207821
>seq4638
Length=22294
Score = 89.7 bits (98), Expect = 4e-12
Identities = 350/543 (64%), Gaps = 8/543 (1%)
Strand=Plus/Plus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|| ||||| ||||| || ||||||||||||| | | |||| | |||||| ||
Sbjct 7191 GCCCCATAAGCAACGGCCTCATCAGGATTAATGCTCTTGTTTAAGTCACGACCATTAAAC 7250
Query 517670 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729
|| | | ||||| | | || ||| |||||||| | || || || |||| |||||
Sbjct 7251 AAGTCTTGCAGAAGCTTTTGTATCTTTGGAATACGTGTGGAGCCACCCACTAGAACAATA 7310
Query 517730 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 517789
||||| | ||| |||||||| ||| | |||| | | ||||| || || ||||||
Sbjct 7311 TCATGGATCTGGCCTTTATCCATTTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGA 7370
Query 517790 CCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-T 517848
||| |||| ||||| | || ||||| || ||| || || || ||| | |
Sbjct 7371 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGT--GATTGAGGTGT 7428
Query 517849 A-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907
| |||| |||| || ||| || |||| ||||| | | || || | || |
Sbjct 7429 AGAAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTACTGGAGA 7488
Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGATTG 517965
| | || || || || ||||||||||| | || | |||| ||| ||| || |||
Sbjct 7489 GGGTGCGCTTGGCTCGCTCACATGCTGTACGCAGACGACGTACAGCTCGCTTGTTG-TTG 7547
Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025
| | | || |||| |||| | || || ||| ||| | | | || | || ||
Sbjct 7548 A-TGATGTCCTTTTTGAATTTGCGTTTAAACTCTGCAATAAAGTGGTTAACCATGCGGTT 7606
Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085
||||| || || |||||||| | || | || | || || | || | || | ||
Sbjct 7607 GTCAAAGTCCTCTCCTCCCAAGTGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCC 7666
Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145
||| |||| || || | | |||||| |||||||| || | ||||| || || ||
Sbjct 7667 ATCCTCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGAC 7726
Query 518146 ATT 518148
|||
Sbjct 7727 ATT 7729
>seq90704
Length=938
Score = 87.8 bits (96), Expect = 1e-11
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 518116 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGTTTTTATCAA 518174
||| || || |||| || || || || || || | ||| || |||| ||| ||| |
Sbjct 486 GGTGCCTCCGCCCAGGTCGAAGATCAGGACGTTTCTCTCTCCTGACTTGCCTTT-ATCCA 544
Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234
|||| ||||| | || || || || || || || || ||||||| || || || || |
Sbjct 545 GACCGTACGCGATGGCGGCCGCCGTGGGCTCGTTGATGATTCTCAGGACGTTGAGTCCCG 604
Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294
|||| ||||| ||||||||||| |||| || || ||||| || || || || || |
Sbjct 605 CAATGACGCCTGCGTCTTTAGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGCGGGGACCG 664
Query 518295 TAATAACGGCAT 518306
| || |||||||
Sbjct 665 TGATGACGGCAT 676
>seq723
Length=186438
Score = 86.0 bits (94), Expect = 5e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || || ||||| || | |||||||| || || ||||||||||||| || |||
Sbjct 37857 TTTTTGTCGAGGCCATAAGCGATGGCAGCAGCTGTGGGCTCATTAATAATTCGCAGGACA 37916
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| || | || |||||||| || || || | || || || || |||||
Sbjct 37917 TTCAGCCCAGAGATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGGGAGTCATTGAAATAG 37976
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || ||||| | || ||||
Sbjct 37977 GCGGGTACAGTCACCACAGCAT 37998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3776032958156296
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