Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 383 2e-101
seq90704 203 4e-47
seq4638 147 3e-30
seq723 95.1 2e-14
seq42427 84.2 3e-11
>seq7764
Length=261495
Score = 383 bits (424), Expect = 2e-101
Identities = 1003/1522 (66%), Gaps = 10/1522 (1%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| || | || ||||| || |||||||| |||||||||||||| || |||||
Sbjct 209391 TCATCCTCTGCCTTGTACTTGTCAGCATCTTGTACCATCTTTTCAATCTCATCTTTGCTG 209332
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| ||| ||||| ||||| ||||| || || || | ||| || | | || || ||
Sbjct 209331 AGTCTGCCCTTGTCATTGGTAATTGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCCACA 209272
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| ||||| | |||||||| | ||| | || || | || | || ||||| |
Sbjct 209271 GCAGACACATTTAGGATACCATTGGTATCTATGTCAAAGGTGACCTCTATCTGTGGCACA 209212
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| || || || | || | ||| || | ||||| | ||||| | | |||| ||| |
Sbjct 209211 CCTCTGGGAGCAGGCGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTG 209152
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | | | |||||||||||| || | ||| || | || || |||||
Sbjct 209151 GTCATGGCTCTTTCACCTTCATACACCTGAATCAGGACTCCTGGCTGGTTATCAGAGTAT 209092
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| |||||||| || | ||| | || || || || || | |||| || |||
Sbjct 209091 GTGGAGAAGATCTGAGTCTGCTTTGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTC 209032
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988
|||| |||||| || || | || ||||||| |||| |||||||| || | |
Sbjct 209031 ATAACACCACCAGCTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAA 208972
Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048
||||| ||| || || ||| | | ||| || || ||||| | || |||||
Sbjct 208971 TCTTGGACATTCTCTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAG 208912
Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108
|| || || ||||| ||||| || | || ||||| ||| |||| || || ||||| |
Sbjct 208911 GCTACTGCTTCATCAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGT 208852
Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT 7168
| | | || ||||| ||||||| ||| || ||||| || || || ||||||| |
Sbjct 208851 AGGAGCTTCTGGATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATC 208792
Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228
|| |||||||| | || | ||| | || | ||||| ||||| |||| | | |
Sbjct 208791 TTGGATTTATCCAGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGGGTTCCCCTG 208732
Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288
|| | ||| ||||||||||| ||||| | || || ||||| || || ||||
Sbjct 208731 AAGAGGTCAGAGTTTAGTTCCTCAAAGCGTGCCCTTGTGATTGATGTGTAAAAGTCAATC 208672
Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348
|| || | | || ||||| |||||| | | | | | || || || |||| ||||
Sbjct 208671 CCCTCAAACAGTGAGTCAATCTCAATGCTGGCCCGAGTGCTGGAGGACAATGTTCTCTTT 208612
Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408
|| | |||||| ||||| || | | | | || | | || | ||||| |||
Sbjct 208611 GCTCTCTCACAGGCCGTGCGGAGTCTCCTCACTGCTCTCTTATTCTGGCTGATATCCTTC 208552
Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCA 7468
|||||||| | ||| || || || ||||| | | ||| || || || ||
Sbjct 208551 TTATGTTTTCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCC 208492
Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTT 7528
||||| | |||||| ||||| || || ||||| || ||||| || || |||||||| |
Sbjct 208491 CCACCGAGGTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTC 208432
Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG 7588
| | || || ||||| || || ||||| || ||||| ||||| ||||| || ||
Sbjct 208431 AGGATTGACACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACGTTGCGCTC-TCC 208373
Query 7589 TCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647
||||| | ||||| || || || || || || || || || || ||||| || |||||
Sbjct 208372 TCTTTTACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACG 208313
Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707
||| || || || | || | | ||||| || || ||||| | || ||||||||
Sbjct 208312 CAGAACATTTAGTCCCGAGATGACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTT 208253
Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767
|||||| || || || || | |||| | | || || ||| || | | | | || ||
Sbjct 208252 AAAGTAAGCTGGAACTGTGATGACCACATTCGATACCCTCTGTCCCAAAAAGGCCTCAGC 208193
Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA-GCCGCAAACTGTTTCG 7826
|| ||| ||||||| || ||||| || |||||||| ||| | | ||| | ||| |
Sbjct 208192 TATTTCTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTT-G 208134
Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTAT 7886
|||| || ||| | || || | | |||| || | || | || |||||
Sbjct 208133 TTTCTCCCTTATATTCCACCTGGACTTTGGGCTT---CCCATTGTCATTGACCACCTTGA 208077
Query 7887 ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGAC 7946
| | ||| |||||| || ||| ||| | |||| ||| ||||||| || || |
Sbjct 208076 AGGGCCAGAGTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCC 208017
Query 7947 GCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCC 8006
| || |||||||| || |||||| ||||||||||||| ||||||||| || || || |
Sbjct 208016 GTTTGGCATCAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTC 207957
Query 8007 CGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTT 8066
|||| || | || | | || ||||| || || || || || || | || ||||
Sbjct 207956 CGATGAGTC--TC-TCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTT 207900
Query 8067 GGTCGTTCGCAATAATTTCTAC 8088
| ||||| | || ||||| ||
Sbjct 207899 GATCGTTGGTGATGATTTCCAC 207878
>seq90704
Length=938
Score = 203 bits (224), Expect = 4e-47
Identities = 620/947 (65%), Gaps = 15/947 (2%)
Strand=Plus/Plus
Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120
|| ||||| || | || ||||| ||| |||||| ||| | ||| | || || ||
Sbjct 1 TCCGGGTTGATGCTCTTGTTCAGCTCTCGACCGTTGAAAAAGTCCTGCAGCAGTTTCTGG 60
Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180
|| || |||||||| || || || || |||| || | || | | | || ||
Sbjct 61 ATCTTGGGGATTCGGGTGGAGCCTCCAACCAGGACCACATCGTGGATCTGGCCCTTGTCC 120
Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240
||||| | ||| | || | ||| || || || |||| | | ||||| |||
Sbjct 121 ATCTTGGCGTCCCTCAGAGCTTTCTCCACGGGCTCCAAGGTTCCCCTGAACAGGTCGGAG 180
Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300
||||| |||||||| || || | ||| ||||| || ||||| |||| ||| || | |
Sbjct 181 CACAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAGTCAATGCCCTCAAACAGA 240
Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360
|| || || || ||| | | || | | || || | ||| | ||| || | ||||||
Sbjct 241 GAGTCGATCTCGATGCTGGCCTGGGAGCTGGAGGACAGCGTCCTCTTGGCTCTCTCACAA 300
Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420
|| || || | | | | ||| | | ||| | || || ||||| ||||| |
Sbjct 301 GCTGTGCGCAGCCTCCTCAAGGCTCTCTTGTTCTGGCTGATGTCCTTCTTGTGTTTCCTC 360
Query 7421 TTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
|| ||||| || ||||| | || | | | | || || || || || |||| |
Sbjct 361 TTGAACTCCTCCACAAAGTGGTTGACCATGCGGTTG---TCAAAGTCCTCTCCTCCCAGG 417
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || || || || || || |||||||| || | || ||| | | | ||
Sbjct 418 TGGGTGTCTCCGGCTGTGGCCTTCACCTCAAAGATGCCGTCCTCGATGGTCAGGATGGAC 477
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597
|| || || || || || |||||||| || || || ||||| | || | |||
Sbjct 478 ACGTCGAAGGTGCCTCCGCCCAGGTCGAAGATCAGGACGTTTCTCTCTCCTGACTTGCCT 537
Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657
||||| |||||||||||||| || |||||||| || || || || || | || |||
Sbjct 538 TTATCCAGACCGTACGCGATGGCGGCCGCCGTGGGCTCGTTGATGATTCTCAGGACGTTG 597
Query 7658 AGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
|| || ||||| | ||| || ||||| || || ||||| || || ||||| ||||||||
Sbjct 598 AGTCCCGCAAT-GACGCCTGCGTCTTTAGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGC 656
Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776
|||||||| | ||| || | | || || | || || | | ||| || || |||||
Sbjct 657 GGGGACCGTGATGACGGCATTGGACACCTTGTGGCCAAGGAAGGCTTCTGCAATCTCTTT 716
Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGTTTCGTT-TCACCG 7834
||| || || ||||| || || ||||| || | | || | | || ||| || ||
Sbjct 717 CATCTTCACCAGGACCATGGAGGAGATCTCCTCTG--GAAAGAAGGCTTTGTTCTCCCCT 774
Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894
|| | || |||| || |||| | ||| | | | | | |||||| | | |||
Sbjct 775 TTGTACTCCACTTGGATTTTGGGCCT-TCCTC--CTTCTGAAAACACCTTAAAGGGCCAG 831
Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954
| |||||||| | |||||| || |||||||||||| || || | ||| ||
Sbjct 832 TGCTTCATATCAGCCTGGACCACCGCATCATCAAACTTTCTTCCAATCAGCCTCTTGGCG 891
Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001
||||| |||||||| | ||||||| || |||||||| |||||
Sbjct 892 TCAAACACTGTGTTGCTCGGGTTCAGAGCCACCTGGTTCTTGGCCGC 938
>seq4638
Length=22294
Score = 147 bits (162), Expect = 3e-30
Identities = 356/539 (66%), Gaps = 0/539 (0%)
Strand=Plus/Plus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
||||| || || || |||||||| || ||||| | || || | || ||| |||||
Sbjct 7191 GCCCCATAAGCAACGGCCTCATCAGGATTAATGCTCTTGTTTAAGTCACGACCATTAAAC 7250
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| || | | | ||| || || || || ||||| || ||||| || | ||| ||
Sbjct 7251 AAGTCTTGCAGAAGCTTTTGTATCTTTGGAATACGTGTGGAGCCACCCACTAGAACAATA 7310
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|||| | | |||||| || || | || | || | ||||| ||||| || | |
Sbjct 7311 TCATGGATCTGGCCTTTATCCATTTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGA 7370
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
| ||||||| ||| | || || |||||||| || | ||| || || || |||
Sbjct 7371 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGTGATTGAGGTGTAG 7430
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
||||| || || || | || ||||| |||||| | | || | | || |
Sbjct 7431 AAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTACTGGAGAGG 7490
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| ||||| || |||||||| || || || | |||||| | || ||| ||| |
Sbjct 7491 GTGCGCTTGGCTCGCTCACATGCTGTACGCAGACGACGTACAGCTCGCTTGTTGTTGATG 7550
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459
|| || || || ||| |||||||||||| || ||||| || | | ||
Sbjct 7551 ATGTCCTTTTTGAATTTGCGTTTAAACTCTGCAATAAAGTGGTTAACCATGCGGTTGTCA 7610
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || || || ||||||||||| |||||||| || || ||||| |||||||| || |
Sbjct 7611 AAGTCCTCTCCTCCCAAGTGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCCATCC 7670
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578
||||| | | | || |||||||| || ||||| || |||||||| ||||| || ||
Sbjct 7671 TCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGACATT 7729
>seq723
Length=186438
Score = 95.1 bits (104), Expect = 2e-14
Identities = 189/279 (68%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || |||||||| |||||||| | || || ||||| || || |||||
Sbjct 35100 GCACCATAGGCCACTGCCTCATCAGGGTTAATGCTCTTGTTTAGTTCCTTCCCATTAAAG 35159
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| ||| | | | || || || || || || || || || || |||| |||||
Sbjct 35160 AAGTCCTGCAGAAGCTTCTGGATCTTTGGAATACGAGTTGACCCTCCCACCAGGACGATG 35219
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217
|| | || | | || || ||||| | ||||| || | ||||| ||||| ||||
Sbjct 35220 TCGTGGACCTGAGCCTTGTCCATCTTGGCATCTCGGAGAGCCTTTTCTACAGGCTCCAGC 35279
Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276
| | | || |||| ||| ||| |||||||| || || | ||| ||||| ||
Sbjct 35280 GTTCCTCTA---AACAGGTCTGCGTTCAGCTCCTCAAAGCGAGCCCTGGTGATGGACGTG 35336
Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315
|| ||||| | ||| || |||| || ||||||||||||
Sbjct 35337 TAAAAATCGATGCCCTCATATAGGGAGTCAATTTCAATG 35375
>seq42427
Length=207
Score = 84.2 bits (92), Expect = 3e-11
Identities = 119/168 (71%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003
|| |||| || || |||||||| | |||||||| || | |||||| ||||| |
Sbjct 42 GTCTCGATACCCAGGGACAGAGGAGCCACGTCCAGCAGCAGCAGGTCCTGAAC------G 95
Query 7004 TTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCC 7057
||||| || ||| | | |||||| || ||||| | || ||||| || ||||||
Sbjct 96 TTCCCAGAAGTGTCTCCCATCAGGATGGCAGCCTGGACGGCGGCGCCGTAAGCCACCGCC 155
Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105
||||| ||||| || | || ||||| ||| |||||| ||| | |||
Sbjct 156 TCATCCGGGTTGATGCTCTTGTTCAGCTCTCGACCGTTGAAAAAGTCC 203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634366544033440
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