Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7764 383 2e-101 seq90704 203 4e-47 seq4638 147 3e-30 seq723 95.1 2e-14 seq42427 84.2 3e-11 >seq7764 Length=261495 Score = 383 bits (424), Expect = 2e-101 Identities = 1003/1522 (66%), Gaps = 10/1522 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || | || ||||| || |||||||| |||||||||||||| || ||||| Sbjct 209391 TCATCCTCTGCCTTGTACTTGTCAGCATCTTGTACCATCTTTTCAATCTCATCTTTGCTG 209332 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | ||| ||||| ||||| ||||| || || || | ||| || | | || || || Sbjct 209331 AGTCTGCCCTTGTCATTGGTAATTGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCCACA 209272 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||| | |||||||| | ||| | || || | || | || ||||| | Sbjct 209271 GCAGACACATTTAGGATACCATTGGTATCTATGTCAAAGGTGACCTCTATCTGTGGCACA 209212 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || || || || | || | ||| || | ||||| | ||||| | | |||| ||| | Sbjct 209211 CCTCTGGGAGCAGGCGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTG 209152 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | |||||||||||| || | ||| || | || || ||||| Sbjct 209151 GTCATGGCTCTTTCACCTTCATACACCTGAATCAGGACTCCTGGCTGGTTATCAGAGTAT 209092 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || |||||||| || | ||| | || || || || || | |||| || ||| Sbjct 209091 GTGGAGAAGATCTGAGTCTGCTTTGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTC 209032 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 |||| |||||| || || | || ||||||| |||| |||||||| || | | Sbjct 209031 ATAACACCACCAGCTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAA 208972 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 ||||| ||| || || ||| | | ||| || || ||||| | || ||||| Sbjct 208971 TCTTGGACATTCTCTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAG 208912 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || || ||||| ||||| || | || ||||| ||| |||| || || ||||| | Sbjct 208911 GCTACTGCTTCATCAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGT 208852 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT 7168 | | | || ||||| ||||||| ||| || ||||| || || || ||||||| | Sbjct 208851 AGGAGCTTCTGGATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATC 208792 Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 || |||||||| | || | ||| | || | ||||| ||||| |||| | | | Sbjct 208791 TTGGATTTATCCAGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGGGTTCCCCTG 208732 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || | ||| ||||||||||| ||||| | || || ||||| || || |||| Sbjct 208731 AAGAGGTCAGAGTTTAGTTCCTCAAAGCGTGCCCTTGTGATTGATGTGTAAAAGTCAATC 208672 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || || | | || ||||| |||||| | | | | | || || || |||| |||| Sbjct 208671 CCCTCAAACAGTGAGTCAATCTCAATGCTGGCCCGAGTGCTGGAGGACAATGTTCTCTTT 208612 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408 || | |||||| ||||| || | | | | || | | || | ||||| ||| Sbjct 208611 GCTCTCTCACAGGCCGTGCGGAGTCTCCTCACTGCTCTCTTATTCTGGCTGATATCCTTC 208552 Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCA 7468 |||||||| | ||| || || || ||||| | | ||| || || || || Sbjct 208551 TTATGTTTTCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCC 208492 Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTT 7528 ||||| | |||||| ||||| || || ||||| || ||||| || || |||||||| | Sbjct 208491 CCACCGAGGTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTC 208432 Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG 7588 | | || || ||||| || || ||||| || ||||| ||||| ||||| || || Sbjct 208431 AGGATTGACACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACGTTGCGCTC-TCC 208373 Query 7589 TCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 ||||| | ||||| || || || || || || || || || || ||||| || ||||| Sbjct 208372 TCTTTTACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACG 208313 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| || || || | || | | ||||| || || ||||| | || |||||||| Sbjct 208312 CAGAACATTTAGTCCCGAGATGACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTT 208253 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||| || || || || | |||| | | || || ||| || | | | | || || Sbjct 208252 AAAGTAAGCTGGAACTGTGATGACCACATTCGATACCCTCTGTCCCAAAAAGGCCTCAGC 208193 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA-GCCGCAAACTGTTTCG 7826 || ||| ||||||| || ||||| || |||||||| ||| | | ||| | ||| | Sbjct 208192 TATTTCTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTT-G 208134 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTAT 7886 |||| || ||| | || || | | |||| || | || | || ||||| Sbjct 208133 TTTCTCCCTTATATTCCACCTGGACTTTGGGCTT---CCCATTGTCATTGACCACCTTGA 208077 Query 7887 ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGAC 7946 | | ||| |||||| || ||| ||| | |||| ||| ||||||| || || | Sbjct 208076 AGGGCCAGAGTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCC 208017 Query 7947 GCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCC 8006 | || |||||||| || |||||| ||||||||||||| ||||||||| || || || | Sbjct 208016 GTTTGGCATCAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTC 207957 Query 8007 CGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTT 8066 |||| || | || | | || ||||| || || || || || || | || |||| Sbjct 207956 CGATGAGTC--TC-TCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTT 207900 Query 8067 GGTCGTTCGCAATAATTTCTAC 8088 | ||||| | || ||||| || Sbjct 207899 GATCGTTGGTGATGATTTCCAC 207878 >seq90704 Length=938 Score = 203 bits (224), Expect = 4e-47 Identities = 620/947 (65%), Gaps = 15/947 (2%) Strand=Plus/Plus Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120 || ||||| || | || ||||| ||| |||||| ||| | ||| | || || || Sbjct 1 TCCGGGTTGATGCTCTTGTTCAGCTCTCGACCGTTGAAAAAGTCCTGCAGCAGTTTCTGG 60 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180 || || |||||||| || || || || |||| || | || | | | || || Sbjct 61 ATCTTGGGGATTCGGGTGGAGCCTCCAACCAGGACCACATCGTGGATCTGGCCCTTGTCC 120 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240 ||||| | ||| | || | ||| || || || |||| | | ||||| ||| Sbjct 121 ATCTTGGCGTCCCTCAGAGCTTTCTCCACGGGCTCCAAGGTTCCCCTGAACAGGTCGGAG 180 Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||||| |||||||| || || | ||| ||||| || ||||| |||| ||| || | | Sbjct 181 CACAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAGTCAATGCCCTCAAACAGA 240 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || || ||| | | || | | || || | ||| | ||| || | |||||| Sbjct 241 GAGTCGATCTCGATGCTGGCCTGGGAGCTGGAGGACAGCGTCCTCTTGGCTCTCTCACAA 300 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | | | | ||| | | ||| | || || ||||| ||||| | Sbjct 301 GCTGTGCGCAGCCTCCTCAAGGCTCTCTTGTTCTGGCTGATGTCCTTCTTGTGTTTCCTC 360 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || ||||| || ||||| | || | | | | || || || || || |||| | Sbjct 361 TTGAACTCCTCCACAAAGTGGTTGACCATGCGGTTG---TCAAAGTCCTCTCCTCCCAGG 417 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || || || || |||||||| || | || ||| | | | || Sbjct 418 TGGGTGTCTCCGGCTGTGGCCTTCACCTCAAAGATGCCGTCCTCGATGGTCAGGATGGAC 477 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 || || || || || || |||||||| || || || ||||| | || | ||| Sbjct 478 ACGTCGAAGGTGCCTCCGCCCAGGTCGAAGATCAGGACGTTTCTCTCTCCTGACTTGCCT 537 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 ||||| |||||||||||||| || |||||||| || || || || || | || ||| Sbjct 538 TTATCCAGACCGTACGCGATGGCGGCCGCCGTGGGCTCGTTGATGATTCTCAGGACGTTG 597 Query 7658 AGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || ||||| | ||| || ||||| || || ||||| || || ||||| |||||||| Sbjct 598 AGTCCCGCAAT-GACGCCTGCGTCTTTAGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGC 656 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 |||||||| | ||| || | | || || | || || | | ||| || || ||||| Sbjct 657 GGGGACCGTGATGACGGCATTGGACACCTTGTGGCCAAGGAAGGCTTCTGCAATCTCTTT 716 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGTTTCGTT-TCACCG 7834 ||| || || ||||| || || ||||| || | | || | | || ||| || || Sbjct 717 CATCTTCACCAGGACCATGGAGGAGATCTCCTCTG--GAAAGAAGGCTTTGTTCTCCCCT 774 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || | || |||| || |||| | ||| | | | | | |||||| | | ||| Sbjct 775 TTGTACTCCACTTGGATTTTGGGCCT-TCCTC--CTTCTGAAAACACCTTAAAGGGCCAG 831 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | |||||||| | |||||| || |||||||||||| || || | ||| || Sbjct 832 TGCTTCATATCAGCCTGGACCACCGCATCATCAAACTTTCTTCCAATCAGCCTCTTGGCG 891 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 ||||| |||||||| | ||||||| || |||||||| ||||| Sbjct 892 TCAAACACTGTGTTGCTCGGGTTCAGAGCCACCTGGTTCTTGGCCGC 938 >seq4638 Length=22294 Score = 147 bits (162), Expect = 3e-30 Identities = 356/539 (66%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || |||||||| || ||||| | || || | || ||| ||||| Sbjct 7191 GCCCCATAAGCAACGGCCTCATCAGGATTAATGCTCTTGTTTAAGTCACGACCATTAAAC 7250 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | | | ||| || || || || ||||| || ||||| || | ||| || Sbjct 7251 AAGTCTTGCAGAAGCTTTTGTATCTTTGGAATACGTGTGGAGCCACCCACTAGAACAATA 7310 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| || || | || | || | ||||| ||||| || | | Sbjct 7311 TCATGGATCTGGCCTTTATCCATTTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGA 7370 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| ||| | || || |||||||| || | ||| || || || ||| Sbjct 7371 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGTGATTGAGGTGTAG 7430 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| || || || | || ||||| |||||| | | || | | || | Sbjct 7431 AAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTACTGGAGAGG 7490 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || |||||||| || || || | |||||| | || ||| ||| | Sbjct 7491 GTGCGCTTGGCTCGCTCACATGCTGTACGCAGACGACGTACAGCTCGCTTGTTGTTGATG 7550 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || || || ||| |||||||||||| || ||||| || | | || Sbjct 7551 ATGTCCTTTTTGAATTTGCGTTTAAACTCTGCAATAAAGTGGTTAACCATGCGGTTGTCA 7610 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || ||||||||||| |||||||| || || ||||| |||||||| || | Sbjct 7611 AAGTCCTCTCCTCCCAAGTGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCCATCC 7670 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||| | | | || |||||||| || ||||| || |||||||| ||||| || || Sbjct 7671 TCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGACATT 7729 >seq723 Length=186438 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| |||||||| | || || ||||| || || ||||| Sbjct 35100 GCACCATAGGCCACTGCCTCATCAGGGTTAATGCTCTTGTTTAGTTCCTTCCCATTAAAG 35159 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | || || || || || || || || || || |||| ||||| Sbjct 35160 AAGTCCTGCAGAAGCTTCTGGATCTTTGGAATACGAGTTGACCCTCCCACCAGGACGATG 35219 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 || | || | | || || ||||| | ||||| || | ||||| ||||| |||| Sbjct 35220 TCGTGGACCTGAGCCTTGTCCATCTTGGCATCTCGGAGAGCCTTTTCTACAGGCTCCAGC 35279 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | | || |||| ||| ||| |||||||| || || | ||| ||||| || Sbjct 35280 GTTCCTCTA---AACAGGTCTGCGTTCAGCTCCTCAAAGCGAGCCCTGGTGATGGACGTG 35336 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || ||||| | ||| || |||| || |||||||||||| Sbjct 35337 TAAAAATCGATGCCCTCATATAGGGAGTCAATTTCAATG 35375 >seq42427 Length=207 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || |||| || || |||||||| | |||||||| || | |||||| ||||| | Sbjct 42 GTCTCGATACCCAGGGACAGAGGAGCCACGTCCAGCAGCAGCAGGTCCTGAAC------G 95 Query 7004 TTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCC 7057 ||||| || ||| | | |||||| || ||||| | || ||||| || |||||| Sbjct 96 TTCCCAGAAGTGTCTCCCATCAGGATGGCAGCCTGGACGGCGGCGCCGTAAGCCACCGCC 155 Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 ||||| ||||| || | || ||||| ||| |||||| ||| | ||| Sbjct 156 TCATCCGGGTTGATGCTCTTGTTCAGCTCTCGACCGTTGAAAAAGTCC 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634366544033440