Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4461 104 3e-17 >seq4461 Length=101207 Score = 104 bits (114), Expect = 3e-17 Identities = 177/252 (70%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||| |||| || |||||||||| || ||||| |||||| | | Sbjct 13326 CCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAGACATTGATGCCGC 13385 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| ||| || | |||| | || ||||| |||||| | |||||||||| Sbjct 13386 CATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCAACCCTCT 13444 Query 111730 TCAACGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 ||||||| || || ||| | || || ||||||| || ||||| | || | ||||| Sbjct 13445 TCAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 13502 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| | ||||| |||| ||| || | | || |||| || || || | || Sbjct 13503 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 13562 Query 111848 TGGTGGTATCGG 111859 ||| || ||||| Sbjct 13563 TGGCGGGATCGG 13574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619993505331520