Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq525 89.7 6e-13 seq8880 82.4 9e-11 seq4859 82.4 9e-11 >seq525 Length=109705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||| Sbjct 79841 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTTGATCCCCGTA 79782 Query 136776 TGGG 136779 |||| Sbjct 79781 TGGG 79778 >seq8880 Length=69162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | || | |||||||||| || ||||| || |||||||| Sbjct 9320 GTAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGA 9379 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 |||||||||||| || |||| ||||| ||||| Sbjct 9380 AGCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412 >seq4859 Length=382710 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 ||||||||| |||||| ||||| |||| ||| || ||||| || ||||| |||| Sbjct 368936 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCT 368877 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAG 119634 ||||||| |||||||| ||| || || |||||||| ||||| ||| || |||| Sbjct 368876 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 368817 Query 119635 CGAATAGACGCTC 119647 | | || ||||| Sbjct 368816 CCACCAGTCGCTC 368804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588265429904800