Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 113 5e-20
seq8880 86.0 7e-12
>seq4461
Length=101207
Score = 113 bits (124), Expect = 5e-20
Identities = 174/244 (71%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122
|| || || ||||| | || || || | || |||| | | || || | ||||| ||
Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515
Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 107180
| ||| ||| ||||| |||||| |||||||| ||||||| |||||| | ||| |
Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCC--GGTTGG 13457
Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239
| || || |||||||||||||| | ||||| ||||| || | | |||| | || |
Sbjct 13456 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACC-ACTTCTCCGACAGCAGGTTG 13398
Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299
|| ||||| | | | | |||||||||||| |||||||| |||| | ||| | ||| | |
Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338
Query 107300 ATGT 107303
||||
Sbjct 13337 ATGT 13334
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 106540 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCAT 106599
||| || || |||| |||| ||||| ||||| | ||||| || || |||||||||||
Sbjct 14029 CTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCAT 13970
Query 106600 GTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647
|||||||||||| || |||||||| |||| || || || | ||| ||
Sbjct 13969 GTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAAC 13922
>seq8880
Length=69162
Score = 86.0 bits (94), Expect = 7e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
||| || ||| ||| || |||| |||||||| |||| ||| || || || ||
Sbjct 10885 CTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCC 10944
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| ||| | ||||| |||| ||||||| || |||||||||||||||||||| || ||
Sbjct 10945 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACC 11004
Query 106612 CGTCTCCGTCTG 106623
||||| |||||
Sbjct 11005 TGTCTCTGTCTG 11016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589269017663840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |