Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 154 1e-31
seq4638 118 9e-21
seq723 100 2e-15
>seq7764
Length=261495
Score = 154 bits (170), Expect = 1e-31
Identities = 397/591 (67%), Gaps = 24/591 (4%)
Strand=Plus/Plus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
|| || || ||| | || ||||| || |||||| || |||| || |||| |||||
Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
||||| || |||| |||||||| ||||| || ||||| |||||| | || || ||
Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCTTTACTGAC 207940
Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAA 550170
|| || | | | | | || ||||| || || | |||| ||| || || || || ||
Sbjct 207941 ACAGAGAGACTCA-TCGGAGATGCTGCTAAGAACCAAGTTGCCA-TG--AACCCCACAAA 207996
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
||| | |||||||| ||||| | ||||||||||| ||| |||| | |||||
Sbjct 207997 CACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAG 208056
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290
|| ||||| | ||||| ||| | | || |||| ||| || || | | | ||
Sbjct 208057 TGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAA-AGTCCAGG 208115
Query 550291 T--ACTCATGAAGGATCTGTTAAACAAT---TTTCA--CCAGAACAAATTTCATCTATGG 550343
| | | || | ||| |||||| |||| || || | ||||| || ||||
Sbjct 208116 TGGAAT-ATAAGGGAG-----AAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGG 208169
Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTA-CGGATGCA 550402
| | | ||||||| | ||| ||| || ||| | || || || | || || |||
Sbjct 208170 TCCTGGTTAAAATGAGAGAAATAGCTGAGGCCTTTTTGGGACA-GAGGGTATCGAATGTG 208228
Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
|| || || || ||||| || ||||| || || || | ||||| || || |||||||||
Sbjct 208229 GTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGA 208288
Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522
|| | ||||| |||||||| ||||| || ||||| || || || || || ||||
Sbjct 208289 GTCATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCC 208348
Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
||||| || |||||| ||| ||| | || || ||||||||||||
Sbjct 208349 TATGGCCTGGATAAAGGTAAAAGAGGAGAGCGCAACGTTCTCATCTTTGAT 208399
Score = 138 bits (152), Expect = 9e-27
Identities = 443/681 (65%), Gaps = 6/681 (1%)
Strand=Plus/Plus
Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972
|| || || || ||||| || || | | || || | |||| ||| ||||| |
Sbjct 208595 ACGGCCTGTGAGAGAGCAAAGAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAGATT 208654
Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032
|| ||| | |||||||| ||||| | | | || | || | ||||| ||||| ||
Sbjct 208655 GACTCACTGTTTGAGGGGATTGACTTTTACACATCAATCACAAGGGCACGCTTTGAGGAA 208714
Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTC 552091
| ||||| ||||| || ||| | || || || ||| |||| || |||| |
Sbjct 208715 CTAAACTCTGACCTCTTCAGGGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGATGC 208773
Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151
|| | ||||||||||| | ||||||||||| | |||||||| ||||||||||| ||
Sbjct 208774 TAAACTGGATAAATCCAAGATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAATCCC 208833
Query 552152 TAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211
||||| | | | || || |||||||||| | | | || | ||| | ||
Sbjct 208834 CAAAATCCAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTATCAA 208893
Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT--TCTTTCTGGACAA 552269
|| ||||| || || ||||| ||||| ||| | || || ||||| || | |||| |
Sbjct 208894 CCCTGATGAAGCAGTAGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGAC-A 208952
Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329
|| | || || | ||| || | | ||| | || || | || | ||||| || |
Sbjct 208953 CCTCA-GAGAATGTCCAAGATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCATT 209011
Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389
|| |||| ||| ||| ||||||| |||||| | | || || || || || ||
Sbjct 209012 GAGACAGCTGGTGGTGTTATGACACCCCTTATCAAACGGAACACCACCATCCCCACAAAG 209071
Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449
| ||| | || || || || || ||||| || | | || ||||| | | |
Sbjct 209072 CAGACTCAGATCTTCTCCACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTAT 209131
Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509
||||| |||||| | || || || || |||| ||||| | ||| | | ||||
Sbjct 209132 GAAGGTGAAAGAGCCATGACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGGT 209191
Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569
| || |||||||| | || || || || || || || || || || || ||| |||||
Sbjct 209192 CTCCCGCCTGCTCCCAGAGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAAT 209251
Query 552570 GGAATTTTGAATGTGACTGCT 552590
|| || | |||||| |||||
Sbjct 209252 GGTATCCTAAATGTGTCTGCT 209272
>seq4638
Length=22294
Score = 118 bits (130), Expect = 9e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || || || ||||| || || |||||||| || |||||||| || || ||||
Sbjct 7972 ATGCTGTCATCACAGTCCCAGCTTACTTCAATGACTCTCAGCGTCAAGCCACCAAGGATG 7913
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| ||| ||| |||| || ||||| ||||| || ||||||||||| || ||||||||
Sbjct 7912 CAGGAACCATTTCTGGTCTCAATGTGCTTCGAATCATCAATGAACCCACAGCTGCTGCCA 7853
Query 550518 TTGCATATGGACTTGATAAA 550537
||||||||||| | || |||
Sbjct 7852 TTGCATATGGATTAGACAAA 7833
>seq723
Length=186438
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | |||||||| || ||||| |||||||| || || || ||||| |||||||
Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| || |||| || ||||| || || ||||| ||||| || || ||||||||
Sbjct 37938 CTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCCA 37879
Query 550518 TTGCATATGGACTTGATAAA 550537
| || ||||| || || |||
Sbjct 37878 TCGCTTATGGCCTCGACAAA 37859
Score = 87.8 bits (96), Expect = 1e-11
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
||||| |||||||| | || |||||||| || | || || | ||| || |
Sbjct 34720 TTTGAGGGAGAAAGGGCCATGACCAAAGATAACAACCTGCTGGGGAAATTTGATCTGACT 34661
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || || |||||||| ||||| || || |||||||| || |||||||| ||||||
Sbjct 34660 GGAATACCCCCAGCTCCTCGAGGAGTTCCTCAGATTGAAGTAACATTCGATATTGATGCC 34601
Query 552567 AATGGAATTTTGAATGTGACTGC 552589
||||| || ||||||| ||||
Sbjct 34600 AATGGCATCATGAATGTCTCTGC 34578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4024191798632840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |