Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7764 154 1e-31 seq4638 118 9e-21 seq723 100 2e-15 >seq7764 Length=261495 Score = 154 bits (170), Expect = 1e-31 Identities = 397/591 (67%), Gaps = 24/591 (4%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || |||| || |||| ||||| Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| || |||| |||||||| ||||| || ||||| |||||| | || || || Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCTTTACTGAC 207940 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAA 550170 || || | | | | | || ||||| || || | |||| ||| || || || || || Sbjct 207941 ACAGAGAGACTCA-TCGGAGATGCTGCTAAGAACCAAGTTGCCA-TG--AACCCCACAAA 207996 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | |||||||| ||||| | ||||||||||| ||| |||| | ||||| Sbjct 207997 CACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGACCCAGTGGTTCAAAG 208056 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || ||||| | ||||| ||| | | || |||| ||| || || | | | || Sbjct 208057 TGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAA-AGTCCAGG 208115 Query 550291 T--ACTCATGAAGGATCTGTTAAACAAT---TTTCA--CCAGAACAAATTTCATCTATGG 550343 | | | || | ||| |||||| |||| || || | ||||| || |||| Sbjct 208116 TGGAAT-ATAAGGGAG-----AAACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGG 208169 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTA-CGGATGCA 550402 | | | ||||||| | ||| ||| || ||| | || || || | || || ||| Sbjct 208170 TCCTGGTTAAAATGAGAGAAATAGCTGAGGCCTTTTTGGGACA-GAGGGTATCGAATGTG 208228 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || || || ||||| || ||||| || || || | ||||| || || ||||||||| Sbjct 208229 GTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGA 208288 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 || | ||||| |||||||| ||||| || ||||| || || || || || |||| Sbjct 208289 GTCATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCC 208348 Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 ||||| || |||||| ||| ||| | || || |||||||||||| Sbjct 208349 TATGGCCTGGATAAAGGTAAAAGAGGAGAGCGCAACGTTCTCATCTTTGAT 208399 Score = 138 bits (152), Expect = 9e-27 Identities = 443/681 (65%), Gaps = 6/681 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || || || || ||||| || || | | || || | |||| ||| ||||| | Sbjct 208595 ACGGCCTGTGAGAGAGCAAAGAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAGATT 208654 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || ||| | |||||||| ||||| | | | || | || | ||||| ||||| || Sbjct 208655 GACTCACTGTTTGAGGGGATTGACTTTTACACATCAATCACAAGGGCACGCTTTGAGGAA 208714 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTC 552091 | ||||| ||||| || ||| | || || || ||| |||| || |||| | Sbjct 208715 CTAAACTCTGACCTCTTCAGGGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGATGC 208773 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 || | ||||||||||| | ||||||||||| | |||||||| ||||||||||| || Sbjct 208774 TAAACTGGATAAATCCAAGATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAATCCC 208833 Query 552152 TAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || |||||||||| | | | || | ||| | || Sbjct 208834 CAAAATCCAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTATCAA 208893 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTAT--TCTTTCTGGACAA 552269 || ||||| || || ||||| ||||| ||| | || || ||||| || | |||| | Sbjct 208894 CCCTGATGAAGCAGTAGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGAC-A 208952 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 || | || || | ||| || | | ||| | || || | || | ||||| || | Sbjct 208953 CCTCA-GAGAATGTCCAAGATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCATT 209011 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 || |||| ||| ||| ||||||| |||||| | | || || || || || || Sbjct 209012 GAGACAGCTGGTGGTGTTATGACACCCCTTATCAAACGGAACACCACCATCCCCACAAAG 209071 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 | ||| | || || || || || ||||| || | | || ||||| | | | Sbjct 209072 CAGACTCAGATCTTCTCCACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTAT 209131 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||| |||||| | || || || || |||| ||||| | ||| | | |||| Sbjct 209132 GAAGGTGAAAGAGCCATGACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGGT 209191 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 | || |||||||| | || || || || || || || || || || || ||| ||||| Sbjct 209192 CTCCCGCCTGCTCCCAGAGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAAT 209251 Query 552570 GGAATTTTGAATGTGACTGCT 552590 || || | |||||| ||||| Sbjct 209252 GGTATCCTAAATGTGTCTGCT 209272 >seq4638 Length=22294 Score = 118 bits (130), Expect = 9e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || ||||| || || |||||||| || |||||||| || || |||| Sbjct 7972 ATGCTGTCATCACAGTCCCAGCTTACTTCAATGACTCTCAGCGTCAAGCCACCAAGGATG 7913 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| ||| |||| || ||||| ||||| || ||||||||||| || |||||||| Sbjct 7912 CAGGAACCATTTCTGGTCTCAATGTGCTTCGAATCATCAATGAACCCACAGCTGCTGCCA 7853 Query 550518 TTGCATATGGACTTGATAAA 550537 ||||||||||| | || ||| Sbjct 7852 TTGCATATGGATTAGACAAA 7833 >seq723 Length=186438 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || ||||| |||||||| || || || ||||| ||||||| Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || ||||| || || ||||| ||||| || || |||||||| Sbjct 37938 CTGGGACCATCTCTGGGCTGAATGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCCA 37879 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 37878 TCGCTTATGGCCTCGACAAA 37859 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 ||||| |||||||| | || |||||||| || | || || | ||| || | Sbjct 34720 TTTGAGGGAGAAAGGGCCATGACCAAAGATAACAACCTGCTGGGGAAATTTGATCTGACT 34661 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || || |||||||| ||||| || || |||||||| || |||||||| |||||| Sbjct 34660 GGAATACCCCCAGCTCCTCGAGGAGTTCCTCAGATTGAAGTAACATTCGATATTGATGCC 34601 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 ||||| || ||||||| |||| Sbjct 34600 AATGGCATCATGAATGTCTCTGC 34578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024191798632840