Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq167 132 4e-26
seq4144 98.7 8e-16
>seq167
Length=124328
Score = 132 bits (146), Expect = 4e-26
Identities = 134/173 (77%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||||| |||||||||| || || ||||||||||||||||| ||||| ||||| |||||
Sbjct 24100 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 24041
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
||||| || || | ||||||| |||| | ||| | | ||| |||||||| ||
Sbjct 24040 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 23981
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30321
|||||||||||| |||||||| || ||||| || | ||||| || |||| ||
Sbjct 23980 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 23928
Score = 82.4 bits (90), Expect = 6e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100
||||||||||||| || |||| |||||| |||| || |||||||| ||| | ||| ||
Sbjct 25263 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 25204
Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145
| | | || |||||||||||||| || ||| ||||| ||||
Sbjct 25203 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 25159
>seq4144
Length=159843
Score = 98.7 bits (108), Expect = 8e-16
Identities = 80/97 (82%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166
|||||||||||| || | ||| |||| ||| |||| ||||| ||||| || ||||| ||
Sbjct 5847 CTCCCTGCTGAGAACAATGTTGATCCGGTCCTTCAGGGGTCTGTTCTTCTCCGGGATTGA 5906
Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGC 112203
|||||| ||||| || ||||| |||||||| ||||||
Sbjct 5907 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTGC 5943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408136947714068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |