Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq167 132 4e-26 seq4144 98.7 8e-16 >seq167 Length=124328 Score = 132 bits (146), Expect = 4e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||||| || || ||||||||||||||||| ||||| ||||| ||||| Sbjct 24100 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 24041 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 24040 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 23981 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30321 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 23980 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 23928 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| || |||| |||||| |||| || |||||||| ||| | ||| || Sbjct 25263 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 25204 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 25203 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 25159 >seq4144 Length=159843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 |||||||||||| || | ||| |||| ||| |||| ||||| ||||| || ||||| || Sbjct 5847 CTCCCTGCTGAGAACAATGTTGATCCGGTCCTTCAGGGGTCTGTTCTTCTCCGGGATTGA 5906 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGC 112203 |||||| ||||| || ||||| |||||||| |||||| Sbjct 5907 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTGC 5943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408136947714068