Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4461 150 3e-31 seq10124 109 1e-18 seq12667 105 1e-17 seq8880 102 2e-16 seq82826 93.3 8e-14 seq4859 84.2 4e-11 >seq4461 Length=101207 Score = 150 bits (166), Expect = 3e-31 Identities = 452/694 (65%), Gaps = 35/694 (5%) Strand=Plus/Minus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||| ||||||| ||||||||| ||||| ||||| || ||| ||| ||||||||| Sbjct 14624 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATG 14565 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC----GAAGCTC 213076 || |||| ||| || ||||||||||| ||||| | | |||| | || | |||| Sbjct 14564 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT-CTTCTCCTTCAGCAGCT- 14507 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 ||||||||| || | |||| || |||| | ||||||||| |||| | Sbjct 14506 --TCCAGTCCCACATGTC-----GGTCGGAGT-CTTC---TCCCACATGTCGTACTGGAG 14458 Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196 |||||||||||| || || ||| | || | ||| || || |||| ||||| Sbjct 14457 GATGCCTTTGCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAG 14398 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 |||||| |||| |||||| ||||||||||| || || || || | |||||||| Sbjct 14397 TTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAG 14338 Query 213257 CTTGGCCTCTGGGGACGTGAAGGGCATCA-TCATGCGTTGGAACACATCAGCCAGCCCCT 213315 | || || ||| ||| || || | ||| | ||| | || |||| |||| Sbjct 14337 TTGAGCTTCGGGGCTTTCGAACGG-ATAACGCATCAGGATGAAGGCGTCTGCCAAACCCT 14279 Query 213316 GGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC----AAG 213371 |||| || || |||||||| | ||| | | ||| ||| | | || || | | | Sbjct 14278 GGACTCCAATCCCGATGGGCCGGTGGCGCTTGTTGGACCT----CTCTGCTTCGGGTACG 14223 Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| ||||| || ||||||||||| ||||| | ||| |||||||| | Sbjct 14222 GGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAG 14163 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491 ||||| | || | | | | || | | | | || || || ||||||||| Sbjct 14162 GCCAGCT--TCTTAAAGTCAAAAGTCCGCTCAGGCGTG-ACGTACATGTTGAGGGCGATG 14106 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCA-----TGATCTCGG 213546 ||||||||| || || |||||||| | | |||||||||| Sbjct 14105 GAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNN 14046 Query 213547 TGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG 213606 |||||| |||||| ||||||||||| ||||| ||| ||| | Sbjct 14045 NNNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGG 13986 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || ||||||||||||||||| | |||||| || Sbjct 13985 CGTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTC 13952 Score = 105 bits (116), Expect = 1e-17 Identities = 273/411 (66%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 214005 CGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAG 214064 ||||| | || |||||||| ||||| | ||||| || || || || || || | Sbjct 13658 CGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATGTAGCTCCCAGTC 13599 Query 214065 GCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 | || | | ||||| | | || || || || ||| | ||||| || | |||||| Sbjct 13598 GATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCAC 13539 Query 214125 CGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAG 214184 || ||| || || |||||| | ||||||||||| | | | |||| ||||||| Sbjct 13538 TGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAG 13479 Query 214185 CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATA 214244 || || ||||| |||| | | || | |||||| || || || ||| ||| | | Sbjct 13478 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC 13419 Query 214245 AACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATC 214304 |||| | || || || |||||||||| | | | | ||||| | ||||| Sbjct 13418 CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGA-- 13361 Query 214305 TGTAGAGCG-CA-CCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT---GGGGC 214359 | || || || |||||| ||||||||||| || | ||| || |||| | | Sbjct 13360 TACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTC---GGCCACTTTCCCGTTGA 13304 Query 214360 CCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGG 214410 ||| ||||| |||||||||||||| || ||||| |||||| || ||||| Sbjct 13303 TCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGG 13253 >seq10124 Length=84669 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| || || ||||||||||| || | ||| | | |||||| | || Sbjct 39428 AGGACCTTCTGCTTCAGCTGGGCCACCTGCTCTCTCAGCAGGCTCGCGGTCGAAGCCAAG 39369 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | ||| ||| ||||||||| |||||||||| | ||| || |||||| Sbjct 39368 TCGGTGTTCTGGGTCTTCAGCGTCTTCACTTTATCCTCCAGCCTGGAGATCCGCTCCAGT 39309 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||||| | || || | ||| || | | ||| | || ||||| | || || ||| Sbjct 39308 TTGCGCCTCCTACACTTAGAGGCGGCAATCCTGTTTCTCAGCCTCTTCCTCTCGGCTTTG 39249 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| |||||||||| ||||||| Sbjct 39248 ATGCGCTCCTGCGTGTCCATGTCGACCGGAGAC 39216 >seq12667 Length=72081 Score = 105 bits (116), Expect = 1e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 |||||||||||| | |||||| ||||| |||||||| || | |||||| |||||||| | Sbjct 17750 CACCAGCTCCCAGCGGTTGGCAGAGAACAGCAGGTGAACGGTGTGGTCCTCCAGCTCACT 17691 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||| |||||||||| | |||||||| || |||||| | ||| | ||||| Sbjct 17690 CTTCTTCTCCAGGTAAGCGCTGATCACCTGTCCGATCGCGGTGCTCCTGTC 17640 >seq8880 Length=69162 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || |||||||||||||| | ||| | ||| ||||| | ||| ||| Sbjct 9290 CTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTAAGCCTCTATGGA 9349 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| ||||| ||||| |||||| ||||||||||| || |||| || || || Sbjct 9350 CTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGAAGGCT 9409 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| |||||| Sbjct 9410 GTTCCTCACACCGTGC 9425 >seq82826 Length=583 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||| |||| || || ||||| | || | | || Sbjct 262 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTC 203 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || || || ||||||||||||||||| |||||||| || |||||||| Sbjct 202 AGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACGC 144 >seq4859 Length=382710 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| |||| ||||||||| | ||||||||| || || ||||| | || |||| | Sbjct 368936 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCT 368877 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||| | || || || || ||||| ||||||||||| ||||| || || || || | Sbjct 368876 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 368817 Query 48273 C 48273 | Sbjct 368816 C 368816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930408952253440