Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 150 3e-31
seq10124 109 1e-18
seq12667 105 1e-17
seq8880 102 2e-16
seq82826 93.3 8e-14
seq4859 84.2 4e-11
>seq4461
Length=101207
Score = 150 bits (166), Expect = 3e-31
Identities = 452/694 (65%), Gaps = 35/694 (5%)
Strand=Plus/Minus
Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020
||||||| ||||||| ||||||||| ||||| ||||| || ||| ||| |||||||||
Sbjct 14624 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATG 14565
Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC----GAAGCTC 213076
|| |||| ||| || ||||||||||| ||||| | | |||| | || | ||||
Sbjct 14564 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT-CTTCTCCTTCAGCAGCT- 14507
Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136
||||||||| || | |||| || |||| | ||||||||| |||| |
Sbjct 14506 --TCCAGTCCCACATGTC-----GGTCGGAGT-CTTC---TCCCACATGTCGTACTGGAG 14458
Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196
|||||||||||| || || ||| | || | ||| || || |||| |||||
Sbjct 14457 GATGCCTTTGCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAG 14398
Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256
|||||| |||| |||||| ||||||||||| || || || || | ||||||||
Sbjct 14397 TTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAG 14338
Query 213257 CTTGGCCTCTGGGGACGTGAAGGGCATCA-TCATGCGTTGGAACACATCAGCCAGCCCCT 213315
| || || ||| ||| || || | ||| | ||| | || |||| ||||
Sbjct 14337 TTGAGCTTCGGGGCTTTCGAACGG-ATAACGCATCAGGATGAAGGCGTCTGCCAAACCCT 14279
Query 213316 GGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC----AAG 213371
|||| || || |||||||| | ||| | | ||| ||| | | || || | | |
Sbjct 14278 GGACTCCAATCCCGATGGGCCGGTGGCGCTTGTTGGACCT----CTCTGCTTCGGGTACG 14223
Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431
||||| ||||| || ||||||||||| ||||| | ||| |||||||| |
Sbjct 14222 GGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAG 14163
Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491
||||| | || | | | | || | | | | || || || |||||||||
Sbjct 14162 GCCAGCT--TCTTAAAGTCAAAAGTCCGCTCAGGCGTG-ACGTACATGTTGAGGGCGATG 14106
Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCA-----TGATCTCGG 213546
||||||||| || || |||||||| | | ||||||||||
Sbjct 14105 GAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNN 14046
Query 213547 TGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG 213606
|||||| |||||| ||||||||||| ||||| ||| ||| |
Sbjct 14045 NNNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGG 13986
Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640
|| ||||||||||||||||| | |||||| ||
Sbjct 13985 CGTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTC 13952
Score = 105 bits (116), Expect = 1e-17
Identities = 273/411 (66%), Gaps = 10/411 (2%)
Strand=Plus/Minus
Query 214005 CGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAG 214064
||||| | || |||||||| ||||| | ||||| || || || || || || |
Sbjct 13658 CGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCCGGCGATGTAGCTCCCAGTC 13599
Query 214065 GCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124
| || | | ||||| | | || || || || ||| | ||||| || | ||||||
Sbjct 13598 GATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCAC 13539
Query 214125 CGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAG 214184
|| ||| || || |||||| | ||||||||||| | | | |||| |||||||
Sbjct 13538 TGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAG 13479
Query 214185 CTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATA 214244
|| || ||||| |||| | | || | |||||| || || || ||| ||| | |
Sbjct 13478 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAAC 13419
Query 214245 AACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATC 214304
|||| | || || || |||||||||| | | | | ||||| | |||||
Sbjct 13418 CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGA-- 13361
Query 214305 TGTAGAGCG-CA-CCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT---GGGGC 214359
| || || || |||||| ||||||||||| || | ||| || |||| | |
Sbjct 13360 TACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTC---GGCCACTTTCCCGTTGA 13304
Query 214360 CCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGG 214410
||| ||||| |||||||||||||| || ||||| |||||| || |||||
Sbjct 13303 TCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTTGTAGG 13253
>seq10124
Length=84669
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| || || ||||||||||| || | ||| | | |||||| | ||
Sbjct 39428 AGGACCTTCTGCTTCAGCTGGGCCACCTGCTCTCTCAGCAGGCTCGCGGTCGAAGCCAAG 39369
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | | ||| ||| ||||||||| |||||||||| | ||| || ||||||
Sbjct 39368 TCGGTGTTCTGGGTCTTCAGCGTCTTCACTTTATCCTCCAGCCTGGAGATCCGCTCCAGT 39309
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
||||||| | || || | ||| || | | ||| | || ||||| | || || |||
Sbjct 39308 TTGCGCCTCCTACACTTAGAGGCGGCAATCCTGTTTCTCAGCCTCTTCCTCTCGGCTTTG 39249
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| |||||||||| |||||||
Sbjct 39248 ATGCGCTCCTGCGTGTCCATGTCGACCGGAGAC 39216
>seq12667
Length=72081
Score = 105 bits (116), Expect = 1e-17
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019
|||||||||||| | |||||| ||||| |||||||| || | |||||| |||||||| |
Sbjct 17750 CACCAGCTCCCAGCGGTTGGCAGAGAACAGCAGGTGAACGGTGTGGTCCTCCAGCTCACT 17691
Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070
||| |||||||||| | |||||||| || |||||| | ||| | |||||
Sbjct 17690 CTTCTTCTCCAGGTAAGCGCTGATCACCTGTCCGATCGCGGTGCTCCTGTC 17640
>seq8880
Length=69162
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || |||||||||||||| | ||| | ||| ||||| | ||| |||
Sbjct 9290 CTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTAAGCCTCTATGGA 9349
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||| ||||| ||||| ||||| |||||| ||||||||||| || |||| || || ||
Sbjct 9350 CTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCCAAAAGAAGGCT 9409
Query 213038 GTTCCTCACTCCGTGC 213053
||||||||| ||||||
Sbjct 9410 GTTCCTCACACCGTGC 9425
>seq82826
Length=583
Score = 93.3 bits (102), Expect = 8e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
||||| | |||||||||| ||||| |||| || || ||||| | || | | ||
Sbjct 262 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTC 203
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||||||| || || || || ||||||||||||||||| |||||||| || ||||||||
Sbjct 202 AGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACGC 144
>seq4859
Length=382710
Score = 84.2 bits (92), Expect = 4e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212
|||| |||| ||||||||| | ||||||||| || || ||||| | || |||| |
Sbjct 368936 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCT 368877
Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272
| |||||| | || || || || ||||| ||||||||||| ||||| || || || || |
Sbjct 368876 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 368817
Query 48273 C 48273
|
Sbjct 368816 C 368816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930408952253440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |