Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4859 102 2e-16 seq82826 100 5e-16 seq8880 87.8 3e-12 seq4461 84.2 4e-11 >seq4859 Length=382710 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| ||||| || ||||| ||||| ||||| ||||| ||| || || ||||| Sbjct 368801 GGGGAGCGACTGGTGGCTTTTGCAGCTGTAGAGGGGATCTTCTTCTCAGGCTCATTTGCT 368860 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| |||||| ||| ||| || |||||||| || ||| ||||| || ||| Sbjct 368861 GCCATCTACTGGCTAAAGAAGAGAGGCCTAATGCCCGGCCTTACCTTCTCCAATGAACTC 368920 Query 25993 ATCAGCAGGGACGA 26006 ||||||||||| || Sbjct 368921 ATCAGCAGGGATGA 368934 >seq82826 Length=583 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || || || |||||||| ||||| ||| || || ||||| Sbjct 129 GGAGAGCGTGTGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCC 188 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | | | || | |||||||| ||| ||| ||||||||| Sbjct 189 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCT 247 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 248 CATCAGCAGAGACGAGG 264 >seq8880 Length=69162 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| |||||||| || ||||| | || || | ||||||| || |||||| || Sbjct 11378 CATAAAGAGGTCTGGAATCCATAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCTTCTTT 11437 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||| ||| |||| |||||||||||||| | |||||||||||| ||||||| || Sbjct 11438 ACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCGTGCCAGGGCTCCAAGTA 11497 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || || |||| || Sbjct 11498 CACCGCAAAGGCCCCTGGTCTCT 11520 >seq4461 Length=101207 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 |||||| ||||||||||||||||||||| || ||| ||| ||||||||||| |||| | Sbjct 14615 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGC 14556 Query 221237 AGCAGACTGTT 221247 ||||| ||||| Sbjct 14555 AGCAGGCTGTT 14545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927724195191040