Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7764 181 7e-40 seq4638 87.8 1e-11 >seq7764 Length=261495 Score = 181 bits (200), Expect = 7e-40 Identities = 379/555 (68%), Gaps = 10/555 (2%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | |||| || ||| Sbjct 207813 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATG 207872 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| || |||| || ||||| || || ||||| || |||||| | | Sbjct 207873 GAAAAGTGGAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCT 207932 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || || |||||||||||||| | |||| ||| || || Sbjct 207933 TTACTGACACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACCCCA 207992 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTC 474562 || ||| | |||||||| ||| | | ||||| | | |||||||| ||| | || Sbjct 207993 CAAACACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGA-CCCAGTGGTT 208051 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATA 474620 ||| ||| ||| | ||||| || |||||| | |||| ||| || || | | Sbjct 208052 CAAAGTGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTC 208111 Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATG 474679 || | |||| | | || ||||| ||| | ||| | || || | |||||||||||| Sbjct 208112 CAGGTGGAATATAAG--GGAGAAAC-AAAGACTTTCTGTCCTGAGGAGATTTCTTCAATG 208168 Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 || | | ||||||| | ||| || ||| | | | | ||||| ||| | ||| Sbjct 208169 GTCCTGGTTAAAATGAGAGAAATAGCTGAG-GCCTTTTTGGGACAGAGGGTATCGAATGT 208227 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || |||||||| || ||||| ||||| || | ||||| || || ||||| || Sbjct 208228 GGTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGG 208287 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | || | || || |||||| | ||||| || ||||| || |||||||| || |||| Sbjct 208288 AGTCATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGC 208347 Query 474859 TTATGGTCTTGATAA 474873 ||||| || ||||| Sbjct 208348 CTATGGCCTGGATAA 208362 Score = 156 bits (172), Expect = 3e-32 Identities = 551/844 (65%), Gaps = 20/844 (2%) Strand=Plus/Plus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| | || |||| ||| ||||| || || |||| || ||||| || || Sbjct 208439 GAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGGGACACACACCTCGGTGGGGAGGAC 208498 Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455 ||||| || ||| | || | || |||| || || ||||| || ||| |||| || Sbjct 208499 TTTGACAACAGAATGGTCAACCACTTTGTG--GAGGAATTCAAAAGAAAACATAAGAAGG 208556 Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515 ||| || || | | |||| | || | || | || || ||||| | || || Sbjct 208557 ATATCAGCCAGAATAAG--AGAGCAGTGAGGAGACTCCGCACGGCCTGTGAGAGAGCAAA 208614 Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575 | || | | || || |||| | | |||| |||| || || ||||| || || Sbjct 208615 GAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAGATTGACTCACTGTTTGAGGGGAT 208674 Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635 ||| | | | || || |||||||| ||||| || | ||||| ||||| || Sbjct 208675 TGACTTTTACACATCAATCACAAGGGCACGCTTTGAGGAACTAAACTCTGACCTCTTCAG 208734 Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAAG 475694 ||| | || || |||||| |||| | | | ||| ||||||| || ||||| |||| Sbjct 208735 GGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGATGCTAAACTGGATAAATC-CAAG 208792 Query 475695 -TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 | ||||||||||| | || || ||||| |||||||| || ||||| |||| | | Sbjct 208793 ATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAATCCCCAAAAT-CCAGAAGCTCCT 208851 Query 475754 TCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || || | || ||||||| | | | || | ||| | || ||||||||||| || || Sbjct 208852 ACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTATCAACCCTGATGAAGCAGTAGC 208911 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTAT-TTTATCAGGTCAATCAGACGAGAAACTAAATA 475871 || || || || ||||| || ||||| | || || | | | ||||| | | Sbjct 208912 CTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGACACCTCA-GAGAATGTCCAAG 208970 Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 || | | ||| | ||||| | || | || | || |||| |||| ||| || ||| Sbjct 208971 ATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCATTGAGACAGCTGGTGGTGTTA 209030 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA--AAAATCAAAAGTATTTTC 475989 |||| ||||| | | || || | ||||| || | | ||| | | || || Sbjct 209031 TGACACCCCTTATCAAACGGAACACCACCATCCCCACAAAGCAGACTCAGA--TCTTCTC 209088 Query 475990 CACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATT 476049 ||| || |||||||| || || || || || | | ||||||||||||| | Sbjct 209089 CACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTATGAAGGTGAAAGAGCCAT 209148 Query 476050 CACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAG 476109 || || || || || ||||||| ||| | || |||| | || ||||||||||| Sbjct 209149 GACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGGTCTCCCGCCTGCTCCCAG 209208 Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169 ||| || || || || || || || ||||| || ||| | |||||||| || ||||| | Sbjct 209209 AGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAATGGTATCCTAAATGTGTC 209268 Query 476170 TGCT 476173 |||| Sbjct 209269 TGCT 209272 >seq4638 Length=22294 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-G 476090 |||||| |||||| | |||||||||||||| | | |||| ||| | |||| | Sbjct 5784 TGAAGGAGAAAGAGCCATGACTAAAGATAATAATATCTTAGGAAAATTTGAA-TTGACCG 5726 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 | ||||| |||| || ||||||||||| || || || || || ||||| || || || | Sbjct 5725 GCATTCCACCTGTCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGACGCTA 5666 Query 476151 ATGGTATTCTTAATGTTACTGC 476172 |||| ||||||||||| |||| Sbjct 5665 ATGGCATTCTTAATGTGTCTGC 5644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264039160464368