Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 181 7e-40
seq4638 87.8 1e-11
>seq7764
Length=261495
Score = 181 bits (200), Expect = 7e-40
Identities = 379/555 (68%), Gaps = 10/555 (2%)
Strand=Plus/Plus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| | ||||| || ||| | || || || ||| |||||| | |||| || |||
Sbjct 207813 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATG 207872
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| ||||| || |||| || ||||| || || ||||| || |||||| | |
Sbjct 207873 GAAAAGTGGAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCT 207932
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
||||||| || || || || |||||||||||||| | |||| ||| || ||
Sbjct 207933 TTACTGACACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACCCCA 207992
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTC 474562
|| ||| | |||||||| ||| | | ||||| | | |||||||| ||| | ||
Sbjct 207993 CAAACACTGTCTTTGATGCCAAACGGCTCATTGGAAGAAGATTTGATGA-CCCAGTGGTT 208051
Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATA 474620
||| ||| ||| | ||||| || |||||| | |||| ||| || || | |
Sbjct 208052 CAAAGTGACATGAAACTCTGGCCCTTCAAGGTGGTCAATGACAATGGGAAGCCCAAAGTC 208111
Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATG 474679
|| | |||| | | || ||||| ||| | ||| | || || | ||||||||||||
Sbjct 208112 CAGGTGGAATATAAG--GGAGAAAC-AAAGACTTTCTGTCCTGAGGAGATTTCTTCAATG 208168
Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738
|| | | ||||||| | ||| || ||| | | | | ||||| ||| | |||
Sbjct 208169 GTCCTGGTTAAAATGAGAGAAATAGCTGAG-GCCTTTTTGGGACAGAGGGTATCGAATGT 208227
Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798
|| || || |||||||| || ||||| ||||| || | ||||| || || ||||| ||
Sbjct 208228 GGTCATCACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGG 208287
Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858
| || | || || |||||| | ||||| || ||||| || |||||||| || ||||
Sbjct 208288 AGTCATCTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGC 208347
Query 474859 TTATGGTCTTGATAA 474873
||||| || |||||
Sbjct 208348 CTATGGCCTGGATAA 208362
Score = 156 bits (172), Expect = 3e-32
Identities = 551/844 (65%), Gaps = 20/844 (2%)
Strand=Plus/Plus
Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399
|||||||| | || |||| ||| ||||| || || |||| || ||||| || ||
Sbjct 208439 GAAGATGGCATATTTGAGGTAAAAGCCACAGCAGGGGACACACACCTCGGTGGGGAGGAC 208498
Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGT 475455
||||| || ||| | || | || |||| || || ||||| || ||| |||| ||
Sbjct 208499 TTTGACAACAGAATGGTCAACCACTTTGTG--GAGGAATTCAAAAGAAAACATAAGAAGG 208556
Query 475456 TGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAA 475515
||| || || | | |||| | || | || | || || ||||| | || ||
Sbjct 208557 ATATCAGCCAGAATAAG--AGAGCAGTGAGGAGACTCCGCACGGCCTGTGAGAGAGCAAA 208614
Query 475516 GCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAAT 475575
| || | | || || |||| | | |||| |||| || || ||||| || ||
Sbjct 208615 GAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAGATTGACTCACTGTTTGAGGGGAT 208674
Query 475576 TGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAG 475635
||| | | | || || |||||||| ||||| || | ||||| ||||| ||
Sbjct 208675 TGACTTTTACACATCAATCACAAGGGCACGCTTTGAGGAACTAAACTCTGACCTCTTCAG 208734
Query 475636 AAAAACAATTGAACCCGTTGAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAAG 475694
||| | || || |||||| |||| | | | ||| ||||||| || ||||| ||||
Sbjct 208735 GGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGATGCTAAACTGGATAAATC-CAAG 208792
Query 475695 -TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753
| ||||||||||| | || || ||||| |||||||| || ||||| |||| | |
Sbjct 208793 ATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAATCCCCAAAAT-CCAGAAGCTCCT 208851
Query 475754 TCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812
|| || | || ||||||| | | | || | ||| | || ||||||||||| || ||
Sbjct 208852 ACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTATCAACCCTGATGAAGCAGTAGC 208911
Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTAT-TTTATCAGGTCAATCAGACGAGAAACTAAATA 475871
|| || || || ||||| || ||||| | || || | | | ||||| | |
Sbjct 208912 CTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGACACCTCA-GAGAATGTCCAAG 208970
Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931
|| | | ||| | ||||| | || | || | || |||| |||| ||| || |||
Sbjct 208971 ATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCATTGAGACAGCTGGTGGTGTTA 209030
Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA--AAAATCAAAAGTATTTTC 475989
|||| ||||| | | || || | ||||| || | | ||| | | || ||
Sbjct 209031 TGACACCCCTTATCAAACGGAACACCACCATCCCCACAAAGCAGACTCAGA--TCTTCTC 209088
Query 475990 CACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATT 476049
||| || |||||||| || || || || || | | ||||||||||||| |
Sbjct 209089 CACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTATGAAGGTGAAAGAGCCAT 209148
Query 476050 CACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAG 476109
|| || || || || ||||||| ||| | || |||| | || |||||||||||
Sbjct 209149 GACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGGTCTCCCGCCTGCTCCCAG 209208
Query 476110 AGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTAC 476169
||| || || || || || || || ||||| || ||| | |||||||| || ||||| |
Sbjct 209209 AGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAATGGTATCCTAAATGTGTC 209268
Query 476170 TGCT 476173
||||
Sbjct 209269 TGCT 209272
>seq4638
Length=22294
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA-G 476090
|||||| |||||| | |||||||||||||| | | |||| ||| | |||| |
Sbjct 5784 TGAAGGAGAAAGAGCCATGACTAAAGATAATAATATCTTAGGAAAATTTGAA-TTGACCG 5726
Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150
| ||||| |||| || ||||||||||| || || || || || ||||| || || || |
Sbjct 5725 GCATTCCACCTGTCCCAAGAGGAGTTCCCCAGATCGAGGTGACCTTTGACATCGACGCTA 5666
Query 476151 ATGGTATTCTTAATGTTACTGC 476172
|||| ||||||||||| ||||
Sbjct 5665 ATGGCATTCTTAATGTGTCTGC 5644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3264039160464368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |