Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq7764 450 2e-121
seq4638 134 2e-26
seq723 89.7 7e-13
>seq7764
Length=261495
Score = 450 bits (498), Expect = 2e-121
Identities = 1058/1581 (67%), Gaps = 17/1581 (1%)
Strand=Plus/Plus
Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361
||||| |||||| | || || || ||||| ||||| || || | || ||| ||
Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880
Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421
|| || ||| | || || ||||| ||| | |||||||| || ||||||||||| ||
Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCTTTACTGAC 207940
Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481
| || | ||| | |||||||| || || || || || |||||||| | || |||
Sbjct 207941 ACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACCCCACAAACACT 208000
Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTC---CAAGAC 195538
|||||||| || || || || ||||| | ||| ||| ||| | ||| |||
Sbjct 208001 GTCTTTGATGCCAAACGGCTCATTGGAAG-AAGATTT--GATGACCCAGTGGTTCAAAGT 208057
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598
|| || || |||| | | | ||| || || || || ||||| | | |
Sbjct 208058 GACATGAAACTCTGGCCCT-TCAAGGTGGTCAA--TGACAATGGGAAGCCCAAAGTCCAG 208114
Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGC-TCCCGAAGAAATTTCGTCTATGGTGTT 195657
|| |||| | | || || || ||| | ||| ||| || || ||||| || ||||| |
Sbjct 208115 GTGGAATATAAGGGAGA-AACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGGTCCT 208173
Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717
| |||| |||| || | || || | || |||| | | || ||| || |
Sbjct 208174 GGTTAAAATGAGAGAAATAGCTGAGGCCTTTTTGGGACAGAGGGTATCGAATGTGGTCAT 208233
Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777
|| || || |||||||| | ||||| || | || || |||||||| |||| | ||
Sbjct 208234 CACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGAGTCAT 208293
Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837
|||| ||||| ||| | || || ||||| || ||||| || || ||||| |||||
Sbjct 208294 CTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCCTATGG 208353
Query 195838 TCTGGACAA-GAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896
||||| || | || || || || || || | ||||||||||| ||||| || |
Sbjct 208354 CCTGGATAAAGGTAAAAGAGGA-GAGCGCAACGTTCTCATCTTTGATCTAGGTGGAGGCA 208412
Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956
| ||||| || ||| | || | ||||||| ||| ||||| || ||||| || || || |
Sbjct 208413 CTTTTGACGTGTCAATCCTGACCATTGAAGATGGCATATTTGAGGTAAAAGCCACAGCAG 208472
Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGAT 196015
| || || || || ||||| || || || || | | || || ||||| ||
Sbjct 208473 GGGACACACACCTCGGTGGGGAGGACTTTGACAACAGAATGGTCAACCACTTTGTG-GAG 208531
Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075
|| ||| |||| ||||||| ||||| ||| || || | | | ||
Sbjct 208532 GAATTCAAAAGAAAACATAAGAAGGATATCAGCCAGAATAAGAGAGCAGTGAGGAGACTC 208591
Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAG 196135
| || || ||||| | || || |||| | || || | ||| | | |||||
Sbjct 208592 CGCACGGCCTGTGAGAGAGCAAAGAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAG 208651
Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195
||||| || ||||||| || |||||||| || ||| | || || | ||||| |||||
Sbjct 208652 ATTGACTCACTGTTTGAGGGGATTGACTTTTACACATCAATCACAAGGGCACGCTTTGAG 208711
Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CGTGA 196254
|| |||||||||| | || ||| |||| ||||||||| |||| | | | ||
Sbjct 208712 GAACTAAACTCTGACCTCTTCAGGGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGA 208770
Query 196255 CGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTAT 196314
|| || ||||||| || ||| || ||||||||||| | || || || || || | ||
Sbjct 208771 TGCTAAACTGGATAAATCCAAGATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAAT 208830
Query 196315 TCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGAT 196374
|| || || || || | || ||||||||| || |||| | ||||| | ||
Sbjct 208831 CCCCAAAATCCAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTAT 208890
Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434
|||||| ||||||||||| || || ||||| || || ||||||||||| ||| || |
Sbjct 208891 CAACCCTGATGAAGCAGTAGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGA 208950
Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494
| | || ||||||||| | ||||| || || || |||||| | || ||||| |
Sbjct 208951 CACCTCAGAGAATGTCCAAGATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCAT 209010
Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554
||| ||||| |||||||||||||| |||| | ||||||| || || || || ||
Sbjct 209011 TGAGACAGCTGGTGGTGTTATGACACCCCTTATCAAACGGAACACCACCATCCCCACAAA 209070
Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614
| || || |||| || || || || ||||| || ||||| || | ||||| || ||
Sbjct 209071 GCAGACTCAGATCTTCTCCACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTA 209130
Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674
|||||| ||| | || | ||||| ||| |||| ||||||| || || | || ||
Sbjct 209131 TGAAGGTGAAAGAGCCATGACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGG 209190
Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734
| || |||| ||||||||||| |||||||| | || ||| || ||||| | ||
Sbjct 209191 TCTCCCGCCTGCTCCCAGAGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAA 209250
Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794
||| || ||||| || | |||| |||||| | |||||| | || || ||
Sbjct 209251 TGGTATCCTAAATGTGTCTGCTGTGGACAAAAGCACCGGCAAAGAAAACAAAATCACAAT 209310
Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854
||||||||||||||| | || || || || |||||| ||||| |||||||| ||
Sbjct 209311 TACCAATGACAAGGGCAGACTCAGCAAAGATGAGATTGAAAAGATGGTACAAGATGCTGA 209370
Query 196855 AAAGTACAGGGAAGAAGACGA 196875
||||||| || ||| || ||
Sbjct 209371 CAAGTACAAGGCAGAGGATGA 209391
>seq4638
Length=22294
Score = 134 bits (148), Expect = 2e-26
Identities = 361/544 (66%), Gaps = 10/544 (2%)
Strand=Plus/Minus
Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925
||||| | |||||||| || || ||||| || |||||||||||| | || | ||||||
Sbjct 7729 AATGTCCTCATCTTTGACCTTGGAGGTGGAACTTTTGATGTCTCAATCCTGACTATTGAG 7670
Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985
| ||| || || || || ||||| || || || || || || | || || || || ||
Sbjct 7669 GATGGCATCTTTGAGGTCAAGGCCACAGCGGGGGACACACACTTGGGAGGAGAGGACTTT 7610
Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045
|| || | | || || || ||||| || || || || || ||
Sbjct 7609 GACAACCGCATGGTTAACCACTTTATTGCAGAGTTTAAACGCAAATTCAAAAAGGACATC 7550
Query 196046 -TCTGGAA-ATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAA 196103
|| || | | || || | ||||| || | || |||||||| || ||||| || |
Sbjct 7549 ATCAACAACAAGCGAG--CTGTACGTCGTCTGCGTACAGCATGTGAGCGAGCCAAGCGCA 7492
Query 196104 CTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163
| ||||| || | || | | |||||||||| || ||| ||| |||| || |
Sbjct 7491 CCCTCTCCAGTAGCACCCAGGCCAGCATTGAGATTGACTCACTGTATGAGGGAACAGATT 7432
Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTT--AGGAA 196221
|||| || | || ||| | || |||||||||||| | || | || |||| |||||
Sbjct 7431 TCTACACCTCAATCACCAGGGCTCGTTTTGAAGAGCTCAATGCAGACCTGTTCCGAGGAA 7372
Query 196222 GTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGA 196281
| | || ||||| ||| | | || | || || || |||||||| || | |
Sbjct 7371 CTCTT--GAGCCTGTGGAAAAGGCCCTGAGGGATGCCAAAATGGATAAAGGCCAGATCCA 7314
Query 196282 TGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG 196341
||| ||||| || ||||| || || || |||||||| ||||| ||| || | || | ||
Sbjct 7313 TGATATTGTTCTAGTGGGTGGCTCCACACGTATTCCAAAGATACAAAAGCTTCTG-CAAG 7255
Query 196342 -CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATG 196400
||| || ||| | || |||||||| | || || || ||||| || ||||||||||
Sbjct 7254 ACTTGTTTAATGGTCGTGACTTAAACAAGAGCATTAATCCTGATGAGGCCGTTGCTTATG 7195
Query 196401 GTGC 196404
| ||
Sbjct 7194 GGGC 7191
Score = 91.5 bits (100), Expect = 2e-13
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 195699 CTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGA 195758
|||||| |||| || | || || || |||||||||| ||| || || || || || |
Sbjct 7981 CTGTGACCAATGCTGTCATCACAGTCCCAGCTTACTTCAATGACTCTCAGCGTCAAGCCA 7922
Query 195759 CAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACA 195817
| ||||| || | | ||| | ||||| || ||| ||| |||| ||||||||||| |||
Sbjct 7921 CCAAGGATGCAGGAACCATTTCTGGTCTCAA-TGTGCTTCGAATCATCAATGAACCCACA 7863
Query 195818 GCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849
|| ||||| ||||| ||||| | ||||| ||
Sbjct 7862 GCTGCTGCCATTGCATATGGATTAGACAAAAA 7831
>seq723
Length=186438
Score = 89.7 bits (98), Expect = 7e-13
Identities = 107/143 (75%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767
|||| || ||||||||||| || || |||| ||| || || || ||||| || || || |
Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939
Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826
||| | || | || || || ||| || ||||||| ||||| || ||||| |||||
Sbjct 37938 CTGGGACCATCTCTGGGCTGAA-TGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCC 37880
Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849
|| |||||||| || ||||| ||
Sbjct 37879 ATCGCTTATGGCCTCGACAAAAA 37857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657068721907520
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