Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7764 450 2e-121 seq4638 134 2e-26 seq723 89.7 7e-13 >seq7764 Length=261495 Score = 450 bits (498), Expect = 2e-121 Identities = 1058/1581 (67%), Gaps = 17/1581 (1%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| |||||| | || || || ||||| ||||| || || | || ||| || Sbjct 207821 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTTTTCCAGCATGGAAAAGTG 207880 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || || ||| | || || ||||| ||| | |||||||| || ||||||||||| || Sbjct 207881 GAAATCATCACCAACGATCAAGGCAACAGGACAACTCCTAGCTATGTTGCCTTTACTGAC 207940 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || | ||| | |||||||| || || || || || |||||||| | || ||| Sbjct 207941 ACAGAGAGACTCATCGGAGATGCTGCTAAGAACCAAGTTGCCATGAACCCCACAAACACT 208000 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTC---CAAGAC 195538 |||||||| || || || || ||||| | ||| ||| ||| | ||| ||| Sbjct 208001 GTCTTTGATGCCAAACGGCTCATTGGAAG-AAGATTT--GATGACCCAGTGGTTCAAAGT 208057 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || |||| | | | ||| || || || || ||||| | | | Sbjct 208058 GACATGAAACTCTGGCCCT-TCAAGGTGGTCAA--TGACAATGGGAAGCCCAAAGTCCAG 208114 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGC-TCCCGAAGAAATTTCGTCTATGGTGTT 195657 || |||| | | || || || ||| | ||| ||| || || ||||| || ||||| | Sbjct 208115 GTGGAATATAAGGGAGA-AACAAAGACTTTCTGTCCTGAGGAGATTTCTTCAATGGTCCT 208173 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||| |||| || | || || | || |||| | | || ||| || | Sbjct 208174 GGTTAAAATGAGAGAAATAGCTGAGGCCTTTTTGGGACAGAGGGTATCGAATGTGGTCAT 208233 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || |||||||| | ||||| || | || || |||||||| |||| | || Sbjct 208234 CACAGTTCCAGCTTACTTTAACGATTCCCAGAGGCAAGCCACAAAGGATGCTGGAGTCAT 208293 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 |||| ||||| ||| | || || ||||| || ||||| || || ||||| ||||| Sbjct 208294 CTCGGGACTAAATGTTCTGCGTATCATAAATGAGCCCACAGCAGCAGCCATTGCCTATGG 208353 Query 195838 TCTGGACAA-GAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 ||||| || | || || || || || || | ||||||||||| ||||| || | Sbjct 208354 CCTGGATAAAGGTAAAAGAGGA-GAGCGCAACGTTCTCATCTTTGATCTAGGTGGAGGCA 208412 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | ||||| || ||| | || | ||||||| ||| ||||| || ||||| || || || | Sbjct 208413 CTTTTGACGTGTCAATCCTGACCATTGAAGATGGCATATTTGAGGTAAAAGCCACAGCAG 208472 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGAT 196015 | || || || || ||||| || || || || | | || || ||||| || Sbjct 208473 GGGACACACACCTCGGTGGGGAGGACTTTGACAACAGAATGGTCAACCACTTTGTG-GAG 208531 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 || ||| |||| ||||||| ||||| ||| || || | | | || Sbjct 208532 GAATTCAAAAGAAAACATAAGAAGGATATCAGCCAGAATAAGAGAGCAGTGAGGAGACTC 208591 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAG 196135 | || || ||||| | || || |||| | || || | ||| | | ||||| Sbjct 208592 CGCACGGCCTGTGAGAGAGCAAAGAGAACATTGTCCTCCAGCACTCGGGCCAGCATTGAG 208651 Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195 ||||| || ||||||| || |||||||| || ||| | || || | ||||| ||||| Sbjct 208652 ATTGACTCACTGTTTGAGGGGATTGACTTTTACACATCAATCACAAGGGCACGCTTTGAG 208711 Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CGTGA 196254 || |||||||||| | || ||| |||| ||||||||| |||| | | | || Sbjct 208712 GAACTAAACTCTGACCTCTTCAGGGGAACCCTGGAGCCTGTTGAA-AAGTCCCTACAAGA 208770 Query 196255 CGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTAT 196314 || || ||||||| || ||| || ||||||||||| | || || || || || | || Sbjct 208771 TGCTAAACTGGATAAATCCAAGATTCATGAAATTGTCTTAGTTGGTGGTTCTACAAGAAT 208830 Query 196315 TCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGAT 196374 || || || || || | || ||||||||| || |||| | ||||| | || Sbjct 208831 CCCCAAAATCCAGAAGCTCCTACAGGATTTCTTCAATGGTAGAGATCTGAACAAGAGTAT 208890 Query 196375 CAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGT 196434 |||||| ||||||||||| || || ||||| || || ||||||||||| ||| || | Sbjct 208891 CAACCCTGATGAAGCAGTAGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGGGA 208950 Query 196435 TGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 | | || ||||||||| | ||||| || || || |||||| | || ||||| | Sbjct 208951 CACCTCAGAGAATGTCCAAGATTTACTGCTTCTGGACGTGGCACCCTTGTCTCTGGGCAT 209010 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 ||| ||||| |||||||||||||| |||| | ||||||| || || || || || Sbjct 209011 TGAGACAGCTGGTGGTGTTATGACACCCCTTATCAAACGGAACACCACCATCCCCACAAA 209070 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 | || || |||| || || || || ||||| || ||||| || | ||||| || || Sbjct 209071 GCAGACTCAGATCTTCTCCACATACTCTGATAACCAGCCAGGAGTCCTGATTCAGGTGTA 209130 Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674 |||||| ||| | || | ||||| ||| |||| ||||||| || || | || || Sbjct 209131 TGAAGGTGAAAGAGCCATGACCAAGGACAACAATCTCCTTGGAAAGTTTGAGCTCACAGG 209190 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 | || |||| ||||||||||| |||||||| | || ||| || ||||| | || Sbjct 209191 TCTCCCGCCTGCTCCCAGAGGTGTGCCACAGATAGAGGTCACCTTTGACATAGATACCAA 209250 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794 ||| || ||||| || | |||| |||||| | |||||| | || || || Sbjct 209251 TGGTATCCTAAATGTGTCTGCTGTGGACAAAAGCACCGGCAAAGAAAACAAAATCACAAT 209310 Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854 ||||||||||||||| | || || || || |||||| ||||| |||||||| || Sbjct 209311 TACCAATGACAAGGGCAGACTCAGCAAAGATGAGATTGAAAAGATGGTACAAGATGCTGA 209370 Query 196855 AAAGTACAGGGAAGAAGACGA 196875 ||||||| || ||| || || Sbjct 209371 CAAGTACAAGGCAGAGGATGA 209391 >seq4638 Length=22294 Score = 134 bits (148), Expect = 2e-26 Identities = 361/544 (66%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || ||||| || |||||||||||| | || | |||||| Sbjct 7729 AATGTCCTCATCTTTGACCTTGGAGGTGGAACTTTTGATGTCTCAATCCTGACTATTGAG 7670 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || || || ||||| || || || || || || | || || || || || Sbjct 7669 GATGGCATCTTTGAGGTCAAGGCCACAGCGGGGGACACACACTTGGGAGGAGAGGACTTT 7610 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | | || || || ||||| || || || || || || Sbjct 7609 GACAACCGCATGGTTAACCACTTTATTGCAGAGTTTAAACGCAAATTCAAAAAGGACATC 7550 Query 196046 -TCTGGAA-ATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAA 196103 || || | | || || | ||||| || | || |||||||| || ||||| || | Sbjct 7549 ATCAACAACAAGCGAG--CTGTACGTCGTCTGCGTACAGCATGTGAGCGAGCCAAGCGCA 7492 Query 196104 CTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163 | ||||| || | || | | |||||||||| || ||| ||| |||| || | Sbjct 7491 CCCTCTCCAGTAGCACCCAGGCCAGCATTGAGATTGACTCACTGTATGAGGGAACAGATT 7432 Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTT--AGGAA 196221 |||| || | || ||| | || |||||||||||| | || | || |||| ||||| Sbjct 7431 TCTACACCTCAATCACCAGGGCTCGTTTTGAAGAGCTCAATGCAGACCTGTTCCGAGGAA 7372 Query 196222 GTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGA 196281 | | || ||||| ||| | | || | || || || |||||||| || | | Sbjct 7371 CTCTT--GAGCCTGTGGAAAAGGCCCTGAGGGATGCCAAAATGGATAAAGGCCAGATCCA 7314 Query 196282 TGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG 196341 ||| ||||| || ||||| || || || |||||||| ||||| ||| || | || | || Sbjct 7313 TGATATTGTTCTAGTGGGTGGCTCCACACGTATTCCAAAGATACAAAAGCTTCTG-CAAG 7255 Query 196342 -CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATG 196400 ||| || ||| | || |||||||| | || || || ||||| || |||||||||| Sbjct 7254 ACTTGTTTAATGGTCGTGACTTAAACAAGAGCATTAATCCTGATGAGGCCGTTGCTTATG 7195 Query 196401 GTGC 196404 | || Sbjct 7194 GGGC 7191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 195699 CTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGA 195758 |||||| |||| || | || || || |||||||||| ||| || || || || || | Sbjct 7981 CTGTGACCAATGCTGTCATCACAGTCCCAGCTTACTTCAATGACTCTCAGCGTCAAGCCA 7922 Query 195759 CAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACA 195817 | ||||| || | | ||| | ||||| || ||| ||| |||| ||||||||||| ||| Sbjct 7921 CCAAGGATGCAGGAACCATTTCTGGTCTCAA-TGTGCTTCGAATCATCAATGAACCCACA 7863 Query 195818 GCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || ||||| ||||| ||||| | ||||| || Sbjct 7862 GCTGCTGCCATTGCATATGGATTAGACAAAAA 7831 >seq723 Length=186438 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| || || || | Sbjct 37998 ATGCTGTGGTGACTGTACCCGCCTATTTCAATGACTCCCAGCGCCAGGCTACCAAAGATG 37939 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | || | || || || ||| || ||||||| ||||| || ||||| ||||| Sbjct 37938 CTGGGACCATCTCTGGGCTGAA-TGTCCTGCGAATTATTAATGAGCCCACAGCTGCTGCC 37880 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || |||||||| || ||||| || Sbjct 37879 ATCGCTTATGGCCTCGACAAAAA 37857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657068721907520