Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq68020 131 2e-24 seq4461 120 4e-21 seq7042 105 8e-17 seq82826 102 1e-15 seq7996 87.8 2e-11 >seq68020 Length=333 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 210 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 151 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| |||||||| ||||| | | ||||||| || | | Sbjct 150 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAAGCCTCTGAGGCGATGCGCTCAAAGA 91 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || |||||||||| ||| | |||| |||||||| ||| || | Sbjct 90 TGTCACTAACGAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCAGGAT 31 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 30 GGACCTGCTTCAGCACCTTGTA 9 >seq4461 Length=101207 Score = 120 bits (132), Expect = 4e-21 Identities = 205/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 1630072 ACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCG 1630131 || ||||| || |||| || | || || ||||| || || || || ||||| | |||| Sbjct 13685 ACATAGCGGGCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCG 13626 Query 1630132 TTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAAAGCCGAT 1630187 || ||||| || | |||| || | | | ||| || | | || | |||||| Sbjct 13625 TTAGTGCCGGCGATGTAGCTCCCAGTCGATCTGATGCAGCT----CACCGCCACGCCGAT 13570 Query 1630188 GCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGAT 1630247 ||||| || || ||||| ||||| |||||||| || || |||||||||||||||||||| Sbjct 13569 CCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGAT 13510 Query 1630248 CGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGC 1630307 ||| |||||||| | | || ||||| || ||||| | || ||||| Sbjct 13509 GCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGC 13450 Query 1630308 GTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || |||| || ||||||| ||| | ||||| || |||||| Sbjct 13449 GTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGT 13393 >seq7042 Length=17161 Score = 105 bits (116), Expect = 8e-17 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 1254415 TGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1254474 |||| |||| ||||||||| |||||||| | ||||||| || | ||||||||||| Sbjct 15912 TGTTGTAGTGAGCCAGACGGGAGGCCTCGGAGGCGATGCGTTCAAAGATGTCGTTGACG- 15970 Query 1254475 ACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1254534 |||||||||| ||| | |||| ||||||||| ||| || || |||||||||| Sbjct 15971 --GAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTGA 16028 Query 1254535 GCACCTTGTAGA 1254546 |||||||||||| Sbjct 16029 GCACCTTGTAGA 16040 >seq82826 Length=583 Score = 102 bits (112), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||||| |||| ||||||||||| |||||||| ||||| Sbjct 262 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTC 203 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||||||||| || ||| ||||| ||||| ||||| |||||||| || Sbjct 202 AGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAA 147 >seq7996 Length=158128 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 25661 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTTTGTGACAC 25602 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| |||||| || || ||||| |||| || |||||| ||||||| Sbjct 25601 CATGACCTGCCGTGGCCACCTGATGGCCATCACTCGTCACGGCATCAACCG 25551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6099218645055572