Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq68020 131 2e-24
seq4461 120 4e-21
seq7042 105 8e-17
seq82826 102 1e-15
seq7996 87.8 2e-11
>seq68020
Length=333
Score = 131 bits (144), Expect = 2e-24
Identities = 150/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||||||||||||||||||||||| | | | ||
Sbjct 210 GCTTGGCCAGCTCCCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 151
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| |||||||| ||||| | | ||||||| || | |
Sbjct 150 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAAGCCTCTGAGGCGATGCGCTCAAAGA 91
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| | || || |||||||||| ||| | |||| |||||||| ||| || |
Sbjct 90 TGTCACTAACGAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCAGGAT 31
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 30 GGACCTGCTTCAGCACCTTGTA 9
>seq4461
Length=101207
Score = 120 bits (132), Expect = 4e-21
Identities = 205/297 (69%), Gaps = 8/297 (3%)
Strand=Plus/Minus
Query 1630072 ACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCG 1630131
|| ||||| || |||| || | || || ||||| || || || || ||||| | ||||
Sbjct 13685 ACATAGCGGGCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCG 13626
Query 1630132 TTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAAAGCCGAT 1630187
|| ||||| || | |||| || | | | ||| || | | || | ||||||
Sbjct 13625 TTAGTGCCGGCGATGTAGCTCCCAGTCGATCTGATGCAGCT----CACCGCCACGCCGAT 13570
Query 1630188 GCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGAT 1630247
||||| || || ||||| ||||| |||||||| || || ||||||||||||||||||||
Sbjct 13569 CCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGAT 13510
Query 1630248 CGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGC 1630307
||| |||||||| | | || ||||| || ||||| | || |||||
Sbjct 13509 GCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGC 13450
Query 1630308 GTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| || |||| || ||||||| ||| | ||||| || ||||||
Sbjct 13449 GTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGT 13393
>seq7042
Length=17161
Score = 105 bits (116), Expect = 8e-17
Identities = 103/132 (78%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 1254415 TGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1254474
|||| |||| ||||||||| |||||||| | ||||||| || | |||||||||||
Sbjct 15912 TGTTGTAGTGAGCCAGACGGGAGGCCTCGGAGGCGATGCGTTCAAAGATGTCGTTGACG- 15970
Query 1254475 ACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1254534
|||||||||| ||| | |||| ||||||||| ||| || || ||||||||||
Sbjct 15971 --GAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTGA 16028
Query 1254535 GCACCTTGTAGA 1254546
||||||||||||
Sbjct 16029 GCACCTTGTAGA 16040
>seq82826
Length=583
Score = 102 bits (112), Expect = 1e-15
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242
||||| | ||||| | |||||||| |||| ||||||||||| |||||||| |||||
Sbjct 262 TCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTC 203
Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||| ||||||||| || ||| ||||| ||||| ||||| |||||||| ||
Sbjct 202 AGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAA 147
>seq7996
Length=158128
Score = 87.8 bits (96), Expect = 2e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| |||||| ||||||||||| |||| ||||| || ||| |||||
Sbjct 25661 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTTTGTGACAC 25602
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160
|||| |||||| || || ||||| |||| || |||||| |||||||
Sbjct 25601 CATGACCTGCCGTGGCCACCTGATGGCCATCACTCGTCACGGCATCAACCG 25551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6099218645055572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |