Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 109 5e-19
>seq4461
Length=101207
Score = 109 bits (120), Expect = 5e-19
Identities = 302/460 (66%), Gaps = 6/460 (1%)
Strand=Plus/Minus
Query 138551 TGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCA 138610
||||| | | ||| | || |||||||| ||||| ||||| || |||| || || ||||
Sbjct 14626 TGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCA 14567
Query 138611 TGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACG 138670
|| |||| || || |||| | ||||| ||| ||||| ||| |
Sbjct 14566 TGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCT 14507
Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAAC 138730
||||||||||| ||| | || | || | |||||| |||||||| | || || |
Sbjct 14506 TCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 14447
Query 138731 TTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG 138790
| | || |||||| |||| ||||| ||| | |||| ||||| ||| ||| |
Sbjct 14446 TGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGG 14387
Query 138791 CCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGG 138850
|||| || || | ||||| || || ||| || || ||||||| | | || ||||
Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGG 14327
Query 138851 CGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTC 138910
||| ||| |||| || | || |||| ||||| |||| || || || || | |
Sbjct 14326 GGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCC 14267
Query 138911 CGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTA 138967
||| || || |||||| || ||| || | | |||||| | || || ||||| |
Sbjct 14266 CGATGGGCCGGTGGCGCTTGTTGGAC-CTCT--CTGCTTCGGGTACGGGGTAGTAGTTGA 14210
Query 138968 CATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007
|| ||||| ||||| | || ||||| |||||| ||
Sbjct 14209 TCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGT 14170
Score = 95.1 bits (104), Expect = 1e-14
Identities = 211/314 (67%), Gaps = 2/314 (1%)
Strand=Plus/Minus
Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATG-TCTCGTATATAC 139735
|||||| ||||| | ||||||| || | |||| | || | | | | ||||| || |
Sbjct 13575 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACT-GCTTCAGGGTGTCGTAGATGC 13517
Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795
| |||||||| |||| ||| | || ||| ||||| || || ||||| | || |
Sbjct 13516 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGG 13457
Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855
| ||||| || || || || ||||| |||||| | | ||||| || | ||
Sbjct 13456 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 13397
Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915
| || || |||||| |||| || ||||||||||||||| || || | ||| ||||
Sbjct 13396 AGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCA 13337
Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGG 139975
| || || || |||||||| || | ||| || |||||| | ||| ||||
Sbjct 13336 TGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGG 13277
Query 139976 TCTTGTAGCCAAAG 139989
| ||| ||||||||
Sbjct 13276 TTTTGAAGCCAAAG 13263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449354821040480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |