Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4461 109 5e-19 >seq4461 Length=101207 Score = 109 bits (120), Expect = 5e-19 Identities = 302/460 (66%), Gaps = 6/460 (1%) Strand=Plus/Minus Query 138551 TGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCA 138610 ||||| | | ||| | || |||||||| ||||| ||||| || |||| || || |||| Sbjct 14626 TGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCA 14567 Query 138611 TGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACG 138670 || |||| || || |||| | ||||| ||| ||||| ||| | Sbjct 14566 TGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCT 14507 Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAAC 138730 ||||||||||| ||| | || | || | |||||| |||||||| | || || | Sbjct 14506 TCCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 14447 Query 138731 TTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG 138790 | | || |||||| |||| ||||| ||| | |||| ||||| ||| ||| | Sbjct 14446 TGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGG 14387 Query 138791 CCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGG 138850 |||| || || | ||||| || || ||| || || ||||||| | | || |||| Sbjct 14386 CCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGG 14327 Query 138851 CGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTC 138910 ||| ||| |||| || | || |||| ||||| |||| || || || || | | Sbjct 14326 GGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCC 14267 Query 138911 CGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTA 138967 ||| || || |||||| || ||| || | | |||||| | || || ||||| | Sbjct 14266 CGATGGGCCGGTGGCGCTTGTTGGAC-CTCT--CTGCTTCGGGTACGGGGTAGTAGTTGA 14210 Query 138968 CATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007 || ||||| ||||| | || ||||| |||||| || Sbjct 14209 TCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGT 14170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 211/314 (67%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATG-TCTCGTATATAC 139735 |||||| ||||| | ||||||| || | |||| | || | | | | ||||| || | Sbjct 13575 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACT-GCTTCAGGGTGTCGTAGATGC 13517 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | |||||||| |||| ||| | || ||| ||||| || || ||||| | || | Sbjct 13516 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGG 13457 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 | ||||| || || || || ||||| |||||| | | ||||| || | || Sbjct 13456 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 13397 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 | || || |||||| |||| || ||||||||||||||| || || | ||| |||| Sbjct 13396 AGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCA 13337 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGG 139975 | || || || |||||||| || | ||| || |||||| | ||| |||| Sbjct 13336 TGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGG 13277 Query 139976 TCTTGTAGCCAAAG 139989 | ||| |||||||| Sbjct 13276 TTTTGAAGCCAAAG 13263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449354821040480