Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq68020 174 2e-37 seq761 120 5e-21 seq4461 114 2e-19 seq38919 107 3e-17 seq7042 100 4e-15 seq82826 95.1 2e-13 >seq68020 Length=333 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 249 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 190 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 189 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 130 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||| | | ||||||| || | ||||| | || || ||||||| Sbjct 129 GAGCCAGACGAGAAGCCTCTGAGGCGATGCGCTCAAAGATGTCACTAACGAAGGAGTTCA 70 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| || || |||||||| |||||||||| Sbjct 69 TGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCAGGATGGACCTGCTTCAGCACCTTGT 10 Query 1485710 AAAC 1485713 | || Sbjct 9 ACAC 6 >seq761 Length=347371 Score = 120 bits (132), Expect = 5e-21 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| ||||||| || || ||| Sbjct 126643 TGTACTTGGTCACCGCCTTGGTGCCCTCGGACACCGCGTGCTTGGCCAGCTCCCCCGGCA 126584 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||||||||||| | ||| | | || ||| ||| ||||||||| || | Sbjct 126583 GCAGCAGCCTGACGGCGGTCTGCACCTCCCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 126525 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||| |||| || |||||| |||| || |||| | |||||| || || |||||| Sbjct 126524 TGAGCCAAGCGGGACGCTTCGGTGGCGATCCGCTCGAAAAGGTCGTTCACGAAGGAGTTC 126465 Query 1485649 ATGAT 1485653 || || Sbjct 126464 ATAAT 126460 >seq4461 Length=101207 Score = 114 bits (126), Expect = 2e-19 Identities = 182/258 (71%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 2073547 ACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCG 2073606 |||||||| || |||| || | || || ||||| || || || || ||||| | |||| Sbjct 13685 ACATAGCGGGCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCG 13626 Query 2073607 TTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCG-----CGGCAAAGCCGA 2073661 || ||||| || | |||| | ||| || || | || ||| | || | ||||| Sbjct 13625 TTAGTGCCGGCGATGTAG-CTCCC-AGTCG---ATCTGATGCAGCTCACCGCCACGCCGA 13571 Query 2073662 TGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGA 2073721 | ||||| || | ||||| ||||| ||||||| ||||| || |||||||||||||||| Sbjct 13570 TCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGA 13511 Query 2073722 TCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGG 2073781 | ||| |||||||| | | ||| ||||| || ||||| || || |||| Sbjct 13510 TGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGG 13451 Query 2073782 CATTGAAGAGCGTGGGCG 2073799 | |||||||| || |||| Sbjct 13450 CGTTGAAGAGGGTTGGCG 13433 >seq38919 Length=200 Score = 107 bits (118), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| ||||||| || ||| ||| Sbjct 114 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACTGCGTGCTTGGCCAGCTCACCGGGCA 55 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583 | ||||||||| |||||||||||||| | || | ||| ||| |||||||| Sbjct 54 GCAGCAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGT 1 >seq7042 Length=17161 Score = 100 bits (110), Expect = 4e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || ||||||||| ||||||| || || ||| Sbjct 14163 TGTACTTGGTGACAGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCAGGCA 14222 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 | |||||||| || ||||||||||| | || | ||| ||| ||||||||| Sbjct 14223 GCAGGAGGCGCACAGCAGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTT 14277 Score = 93.3 bits (102), Expect = 7e-13 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| ||| |||||||| | ||||||| || | ||||||||||| ||||||||| Sbjct 15923 GCCAGACGGGAGGCCTCGGAGGCGATGCGTTCAAAGATGTCGTTGACG---GAGTTCATG 15979 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||||| ||| || || |||||||||||||||||||| Sbjct 15980 ATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTGAGCACCTTGTAG 16039 Query 1485712 AC 1485713 || Sbjct 16040 AC 16041 >seq82826 Length=583 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 794336 AGGCACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGC 794395 || ||||| |||| | ||||| | |||||||| ||| ||||||||||| ||||||| Sbjct 269 AGTCACCT-CGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGC 211 Query 794396 GCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGG 794455 | ||||| ||||| |||||||| || ||| ||||| ||||| ||||| ||||||| Sbjct 210 GTTTCTTCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGG 151 Query 794456 CAAA 794459 | || Sbjct 150 CGAA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7905979552870524