Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq68020 174 2e-37
seq761 120 5e-21
seq4461 114 2e-19
seq38919 107 3e-17
seq7042 100 4e-15
seq82826 95.1 2e-13
>seq68020
Length=333
Score = 174 bits (192), Expect = 2e-37
Identities = 185/244 (76%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| || ||| |||
Sbjct 249 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 190
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||||||||||||||||||||| | || | ||| ||| ||||||||| |
Sbjct 189 GCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 130
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| || ||||| | | ||||||| || | ||||| | || || |||||||
Sbjct 129 GAGCCAGACGAGAAGCCTCTGAGGCGATGCGCTCAAAGATGTCACTAACGAAGGAGTTCA 70
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| |||||||| ||| || || |||||||| ||||||||||
Sbjct 69 TGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCAGGATGGACCTGCTTCAGCACCTTGT 10
Query 1485710 AAAC 1485713
| ||
Sbjct 9 ACAC 6
>seq761
Length=347371
Score = 120 bits (132), Expect = 5e-21
Identities = 139/185 (75%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || |||||||| ||||| || || |||||| ||||||| || || |||
Sbjct 126643 TGTACTTGGTCACCGCCTTGGTGCCCTCGGACACCGCGTGCTTGGCCAGCTCCCCCGGCA 126584
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| | ||||||||||| | ||| | | || ||| ||| ||||||||| || |
Sbjct 126583 GCAGCAGCCTGACGGCGGTCTGCACCTCCCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 126525
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
| |||| |||| || |||||| |||| || |||| | |||||| || || ||||||
Sbjct 126524 TGAGCCAAGCGGGACGCTTCGGTGGCGATCCGCTCGAAAAGGTCGTTCACGAAGGAGTTC 126465
Query 1485649 ATGAT 1485653
|| ||
Sbjct 126464 ATAAT 126460
>seq4461
Length=101207
Score = 114 bits (126), Expect = 2e-19
Identities = 182/258 (71%), Gaps = 10/258 (4%)
Strand=Plus/Minus
Query 2073547 ACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCG 2073606
|||||||| || |||| || | || || ||||| || || || || ||||| | ||||
Sbjct 13685 ACATAGCGGGCGGTGTTATTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCG 13626
Query 2073607 TTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCG-----CGGCAAAGCCGA 2073661
|| ||||| || | |||| | ||| || || | || ||| | || | |||||
Sbjct 13625 TTAGTGCCGGCGATGTAG-CTCCC-AGTCG---ATCTGATGCAGCTCACCGCCACGCCGA 13571
Query 2073662 TGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGA 2073721
| ||||| || | ||||| ||||| ||||||| ||||| || ||||||||||||||||
Sbjct 13570 TCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGA 13511
Query 2073722 TCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGG 2073781
| ||| |||||||| | | ||| ||||| || ||||| || || ||||
Sbjct 13510 TGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGG 13451
Query 2073782 CATTGAAGAGCGTGGGCG 2073799
| |||||||| || ||||
Sbjct 13450 CGTTGAAGAGGGTTGGCG 13433
>seq38919
Length=200
Score = 107 bits (118), Expect = 3e-17
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || |||||||| ||||| || || |||||| ||||||| || ||| |||
Sbjct 114 TGTACTTGGTAACAGCCTTGGTTCCCTCAGACACTGCGTGCTTGGCCAGCTCACCGGGCA 55
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583
| ||||||||| |||||||||||||| | || | ||| ||| ||||||||
Sbjct 54 GCAGCAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGT 1
>seq7042
Length=17161
Score = 100 bits (110), Expect = 4e-15
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| || || || ||||||||| ||||||| || || |||
Sbjct 14163 TGTACTTGGTGACAGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCAGGCA 14222
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584
| |||||||| || ||||||||||| | || | ||| ||| |||||||||
Sbjct 14223 GCAGGAGGCGCACAGCAGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTT 14277
Score = 93.3 bits (102), Expect = 7e-13
Identities = 94/122 (77%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
||||| ||| |||||||| | ||||||| || | ||||||||||| |||||||||
Sbjct 15923 GCCAGACGGGAGGCCTCGGAGGCGATGCGTTCAAAGATGTCGTTGACG---GAGTTCATG 15979
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711
|| ||| | ||| ||||||||| ||| || || ||||||||||||||||||||
Sbjct 15980 ATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTGAGCACCTTGTAG 16039
Query 1485712 AC 1485713
||
Sbjct 16040 AC 16041
>seq82826
Length=583
Score = 95.1 bits (104), Expect = 2e-13
Identities = 96/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Minus
Query 794336 AGGCACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGC 794395
|| ||||| |||| | ||||| | |||||||| ||| ||||||||||| |||||||
Sbjct 269 AGTCACCT-CGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGC 211
Query 794396 GCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGG 794455
| ||||| ||||| |||||||| || ||| ||||| ||||| ||||| |||||||
Sbjct 210 GTTTCTTCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGG 151
Query 794456 CAAA 794459
| ||
Sbjct 150 CGAA 147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7905979552870524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |