Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7764 251 5e-61 seq4638 89.7 4e-12 seq90704 87.8 1e-11 seq723 86.0 5e-11 >seq7764 Length=261495 Score = 251 bits (278), Expect = 5e-61 Identities = 970/1507 (64%), Gaps = 20/1507 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| || || || || |||| || ||| || | |||| |||||| || Sbjct 209317 ATTGGTAATTGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCCACAGCAGACACATTTAG 209258 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||||| ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 209257 GATACCATTGGTATCTATGTCAAAGGTGACCTCTATCTGTGGCACACCTCTGGGAGCAGG 209198 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||| ||| | | ||| |||| || ||| || || || || | || ||| Sbjct 209197 CGGGAGACCTGTGAGCTCAAACTTTCCAAGGAGATTGTTGTCCTTGGTCATGGCTCTTTC 209138 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||| || | | || || ||| | | || ||||| || || || | || | ||| Sbjct 209137 ACCTTCATACACCTGAATCAGGACTCCTGGCTGGTTATCAGAGTATGTGGAGAAGA-TCT 209079 Query 281620 GGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | | || || || || ||||| | | |||| ||||||| |||||||| Sbjct 209078 GAGTCTGCTTTGTGGGGATGGTGGTGTTCCGTTTGATAAGGGGTGTCATAACACCACCAG 209019 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 |||| || | || ||||| | || | || || | || | | || ||| | || | Sbjct 209018 CTGTCTCAATGCCCAGAGACAAGGGTGCCACGTCCAGAAGCAGTAAATCTTGGACATTCT 208959 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | || | || | || ||||| || || | || ||||| || || || ||||||| Sbjct 208958 CTGAGGTGTCCCCCATGAGGATAGCAGCCTGGACTGCTGCACCGTAGGCTACTGCTTCAT 208899 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 281857 |||| || | | | | || || | | |||||||||| |||| || || | ||| Sbjct 208898 CAGGGTTGATACTCTTGTTCAGATCTCTACCATTGAAGAAATCCTGTAGGAGCT-TCTGG 208840 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 | || || || | | || || |||||||| ||||||||||| | || ||||||||| Sbjct 208839 ATTTTGGGGATTCTTGTAGAACCACCAACTAAGACAATTTCATGAATCTTGGATTTATCC 208780 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 ||||| | ||| || |||||||| || || || | || || | ||| || Sbjct 208779 AGTTTAGCATCTTGTAGGGACTTTTCAACAGGCTCCAGGGTTCCCCTGAAGAGGTCAGAG 208720 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 282035 ||||| || || || || || || ||| | || || ||||| || || |||| Sbjct 208719 TTTAGTTCCTCAAAGCGTGCCCTTGT--GATTGATGTGTAAAAGTCAATCCCCTCAAACA 208662 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 || |||| ||||| | | |||| || || | || | || || | |||| Sbjct 208661 GTGAGTCAATCTCAATGCTGGCCCGAGTGCTGGAGGACAATGTTCTCTTTGCTCTCTCAC 208602 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTT 282153 | || || | ||||| | | ||| | || ||| | | | ||| | |||| ||| Sbjct 208601 AGGCCGTGCGGAGTCTCCTCACTGCTCT--CTTATTCTGGCTGATATCCTTCTTATGTTT 208544 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 ||| ||||| || || ||| | | || | | || ||||| || || || || | Sbjct 208543 TCTTTTGAATTCCTCCACAAAGTGGTTGACCATTCTGTTGTCAAAGTCCTCCCCACCGAG 208484 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | || | |||| || ||| |||| | || | |||||||||| | || | | Sbjct 208483 GTGTGTGTCCCCTGCTGTGGCTTTTACCTCAAATATGCCATCTTCAATGGTCAGGATTGA 208424 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 || ||| || || ||||| | |||||| || || || || ||| |||| || Sbjct 208423 CACGTCAAAAGTGCCTCCACCTAGATCAAAGATGAGAACGTTGCGCTCTCC-TCTT--TT 208367 Query 282334 ---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 |||||| || ||||| |||| || || || || || ||||| || || | || ||| Sbjct 208366 ACCTTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGGGCTCATTTATGATACGCAGAAC 208307 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| || || | || ||| ||||| || |||||||| || || ||||||||||| || Sbjct 208306 ATTTAGTCCCGAGATGACTCCAGCATCCTTTGTGGCTTGCCTCTGGGAATCGTTAAAGTA 208247 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 || ||||| || || || ||| | || | ||| | |||| | | || ||| ||| Sbjct 208246 AGCTGGAACTGTGATGACCACATTCGATACCCTCTGTCCCAA-AAAGGCCTCAGCTATTT 208188 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT 282569 | |||||||| | | |||||| ||||| | || ||| | | ||| | ||| Sbjct 208187 CTCTCATTTTAACCAGGACCATTGAAGAAATCTCCTCAGGACAGAAAGTCTTTGTTTCTC 208128 Query 282570 TTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 | |||| || | | | || || | |||| | || || || ||||| Sbjct 208127 CCTTATATTCCACCTGGACTTTGGGCTTCCCATTGTCATTGACCACCTTGAAGGGCCAGA 208068 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 |||||| || |||||| | |||||| ||| ||| ||||| | ||||| |||| Sbjct 208067 GTTTCATGTCACTTTGAACCACTGGGTCATCAAATCTTCTTCCAATGAGCCGTTTGGCAT 208008 Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||| || || || || | ||| |||| | || || |||||||| || || Sbjct 208007 CAAAGACAGTGTTTGTGGGGTTCATGGCAACTTGGTTCTTAGCAGCATCTCCGATGAGTC 207948 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| || ||||| | |||||| |||||||| | || |||||||| || | | Sbjct 207947 TCTCTGTGTCAGTAAAGGCAACATAGCTAGGAGTTGTCCTGTTGCCTTGATCGTTGGTGA 207888 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | || || |||||| | || || || | ||| | Sbjct 207887 TGATTTCCACTTTTCCATGCTGGAAAACCCCGACACAAGAGTAGGTGGTGCCCAGATCGA 207828 Query 282870 TACCAAT 282876 | ||||| Sbjct 207827 TGCCAAT 207821 >seq4638 Length=22294 Score = 89.7 bits (98), Expect = 4e-12 Identities = 350/543 (64%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || ||||| ||||| || ||||||||||||| | | |||| | |||||| || Sbjct 7191 GCCCCATAAGCAACGGCCTCATCAGGATTAATGCTCTTGTTTAAGTCACGACCATTAAAC 7250 Query 281837 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 || | | ||||| | | || ||| |||||||| | || || || |||| ||||| Sbjct 7251 AAGTCTTGCAGAAGCTTTTGTATCTTTGGAATACGTGTGGAGCCACCCACTAGAACAATA 7310 Query 281897 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 281956 ||||| | ||| |||||||| ||| | |||| | | ||||| || || |||||| Sbjct 7311 TCATGGATCTGGCCTTTATCCATTTTGGCATCCCTCAGGGCCTTTTCCACAGGCTCAAGA 7370 Query 281957 CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-T 282015 ||| |||| ||||| | || ||||| || ||| || || || ||| | | Sbjct 7371 GTTCCTCGGAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGT--GATTGAGGTGT 7428 Query 282016 A-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074 | |||| |||| || ||| || |||| ||||| | | || || | || | Sbjct 7429 AGAAATCTGTTCCCTCATACAGTGAGTCAATCTCAATGCTGGCCTGGGTGCTACTGGAGA 7488 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGATTG 282132 | | || || || || ||||||||||| | || | |||| ||| ||| || ||| Sbjct 7489 GGGTGCGCTTGGCTCGCTCACATGCTGTACGCAGACGACGTACAGCTCGCTTGTTG-TTG 7547 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 | | | || |||| |||| | || || ||| ||| | | | || | || || Sbjct 7548 A-TGATGTCCTTTTTGAATTTGCGTTTAAACTCTGCAATAAAGTGGTTAACCATGCGGTT 7606 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||||| || || |||||||| | || | || | || || | || | || | || Sbjct 7607 GTCAAAGTCCTCTCCTCCCAAGTGTGTGTCCCCCGCTGTGGCCTTGACCTCAAAGATGCC 7666 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| || || | | |||||| |||||||| || | ||||| || || || Sbjct 7667 ATCCTCAATAGTCAGGATTGAGACATCAAAAGTTCCACCTCCAAGGTCAAAGATGAGGAC 7726 Query 282313 ATT 282315 ||| Sbjct 7727 ATT 7729 >seq90704 Length=938 Score = 87.8 bits (96), Expect = 1e-11 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGTTTTTATCAA 282341 ||| || || |||| || || || || || || | ||| || |||| ||| ||| | Sbjct 486 GGTGCCTCCGCCCAGGTCGAAGATCAGGACGTTTCTCTCTCCTGACTTGCCTTT-ATCCA 544 Query 282342 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 282401 |||| ||||| | || || || || || || || || ||||||| || || || || | Sbjct 545 GACCGTACGCGATGGCGGCCGCCGTGGGCTCGTTGATGATTCTCAGGACGTTGAGTCCCG 604 Query 282402 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 282461 |||| ||||| ||||||||||| |||| || || ||||| || || || || || | Sbjct 605 CAATGACGCCTGCGTCTTTAGTGGCCTGTCGCTGGGAGTCGTTGAAGTAGGCGGGGACCG 664 Query 282462 TAATAACGGCAT 282473 | || ||||||| Sbjct 665 TGATGACGGCAT 676 >seq723 Length=186438 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| || | |||||||| || || ||||||||||||| || ||| Sbjct 37857 TTTTTGTCGAGGCCATAAGCGATGGCAGCAGCTGTGGGCTCATTAATAATTCGCAGGACA 37916 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | || |||||||| || || || | || || || || ||||| Sbjct 37917 TTCAGCCCAGAGATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGGGAGTCATTGAAATAG 37976 Query 282452 GCAGGAACAGTAATAACGGCATCTG 282476 || || ||||| | || |||| || Sbjct 37977 GCGGGTACAGTCACCACAGCATTTG 38001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3735891872276616