Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10680 91.5 3e-13 >seq10680 Length=108585 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 60141 TAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGT 60200 |||| |||| | |||||||| | || || ||||| || || ||| | || || || | Sbjct 28777 TAGCAGGAGCTCTCTGGTGGTATTTCATTTCCAAAGGCATTGAGTACCTGGACACAGTAT 28836 Query 60201 TTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTA 60260 ||||||| || ||||||||||| || ||||||| || | ||||| || || || | | Sbjct 28837 TTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCA 28896 Query 60261 CTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 | ||||| || | | ||| | ||||| || ||| | || ||||| ||| Sbjct 28897 CCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACAA 28946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980613061438924