Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq27000 89.7 7e-13
seq60294 82.4 1e-10
>seq27000
Length=4504
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||| ||||||||||| ||||| |||| || || | |||||||||||||||| ||||
Sbjct 1889 TCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTC 1948
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 1949 CCCGACGGGGAG 1960
Score = 86.0 bits (94), Expect = 8e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||| ||||||||||| ||||| |||| || || | |||||||||||||||| ||||
Sbjct 1889 TCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTC 1948
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 1949 CCCGACGGGGAG 1960
>seq60294
Length=274
Score = 82.4 bits (90), Expect = 1e-10
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| | ||| |||| ||||| | |||||||| |||| ||||||
Sbjct 87 TCCTCGTTAGTATAGTGGTGATTATCCCCGCCTGTCACGTGGGAGACCAGGGTACGATTC 28
Query 8718 CCCGACGAGGAGC 8730
|| |||| |||||
Sbjct 27 CCTGACGGGGAGC 15
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652057175391040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |