Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq27000 89.7 7e-13 seq60294 82.4 1e-10 >seq27000 Length=4504 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||| ||||||||||| ||||| |||| || || | |||||||||||||||| |||| Sbjct 1889 TCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTC 1948 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1949 CCCGACGGGGAG 1960 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||| ||||||||||| ||||| |||| || || | |||||||||||||||| |||| Sbjct 1889 TCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTC 1948 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1949 CCCGACGGGGAG 1960 >seq60294 Length=274 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| | ||| |||| ||||| | |||||||| |||| |||||| Sbjct 87 TCCTCGTTAGTATAGTGGTGATTATCCCCGCCTGTCACGTGGGAGACCAGGGTACGATTC 28 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 27 CCTGACGGGGAGC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652057175391040