Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 156 4e-33
seq8880 87.8 2e-12
seq82826 84.2 2e-11
>seq4461
Length=101207
Score = 156 bits (172), Expect = 4e-33
Identities = 527/818 (64%), Gaps = 34/818 (4%)
Strand=Plus/Minus
Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385
|||||||||||||||| ||||| ||||| | |||||||||||| || | ||||||
Sbjct 14609 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGG 14550
Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445
||| | || ||| | || || || |||||| | ||||||||| |
Sbjct 14549 CTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCG 14490
Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCG 148505
| ||| ||| | ||||||||||||||| || ||||| ||| | || ||| ||
Sbjct 14489 GTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCA 14430
Query 148506 TACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAG 148565
|||| ||| || || || | ||||||||||||||||| ||||| || ||| |||||
Sbjct 14429 TACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAG 14370
Query 148566 TAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATA 148625
|| || |||||| || || |||||||||| || ||||||| |||| |
Sbjct 14369 TAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGGGGCTTTCGAACGGATAA 14310
Query 148626 CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTA 148685
|||| | | | || ||||| || | ||||| || || | || |||||||||||
Sbjct 14309 CGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGATGGGCCGGTGGCGC 14250
Query 148686 ATGTTGGAGAGGCGCGC-GCTCTCG---AGCGGATAGTGGTTGCGGTCGATGATCTTGTC 148741
||||||| | | | ||| ||| | || |||| |||| || ||||||||||
Sbjct 14249 TTGTTGGA---CCTCTCTGCT-TCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTT 14194
Query 148742 AAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAATCGTACTT 148795
|| || ||| | |||||| || | | |||| || |||||| || |
Sbjct 14193 CAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCAAAA--GT-CCG 14137
Query 148796 GTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATC 148855
||| || | | ||| | |||||| ||||| || || || || ||| ||| ||
Sbjct 14136 CTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTC 14077
Query 148856 CGGGGCGCTGTACTCTAC-----GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCC 148910
| | | ||||||| || |||||| ||||| |||
Sbjct 14076 CTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGTACCC 14017
Query 148911 ACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCA 148970
| ||||| || |||||||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 14016 AGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTCCCG 13957
Query 148971 GTTTCCACCTGCGTTTCCACTAT---GAACCGA---TGCAGGTCCTGCGCGCGCACTTGC 149024
|||||| ||| | || | || | ||| | ||| | ||| | | ||| | |
Sbjct 13956 GTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCAC---CACCTTC 13900
Query 149025 TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAG 149084
| | | | || |||| || ||| ||| || ||| ||| ||| |||| || ||
Sbjct 13899 TTCAC---CCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAG 13843
Query 149085 CAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122
|| ||||| || ||||| |||| || || ||||| ||
Sbjct 13842 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 13805
Score = 96.9 bits (106), Expect = 3e-15
Identities = 223/335 (67%), Gaps = 6/335 (2%)
Strand=Plus/Minus
Query 149418 ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477
|||||||| ||||| || | || || ||| ||||| | || || |||||||
Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518
Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537
|||||||||||||| |||||||| ||||| ||||| | ||| |||||
Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 13458
Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCG 149597
|| ||||| ||| | ||| || |||||| || || | |||| || || | |
Sbjct 13457 GTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTG 13398
Query 149598 TACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGC 149657
|| | ||| | || || ||||| || || ||||| || | | || | ||| |||
Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338
Query 149658 ATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAGCCGTTTTCT 149714
|| |||||||| ||||| |||||||| ||| || || |||| ||| | ||
Sbjct 13337 ATGTGCTGCGGGCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGATAGGAGCGCTCC 13281
Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTC 149749
|| || ||| |||||||| | |||||| ||| ||
Sbjct 13280 AGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATC 13246
>seq8880
Length=69162
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
|| ||||| || || | ||||||||||||| ||||||| ||||| || | || |||
Sbjct 10901 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 10960
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
|||| |||||||| ||||||||||| |||||||| ||
Sbjct 10961 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998
>seq82826
Length=583
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738
|| ||||||||||| || |||||||||||||| | ||| |||| | |||| |||
Sbjct 250 ATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTCAGCCAGAAGATG 191
Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797
||||||||| ||| || ||||| | ||||||||| ||| || || |||| |||||
Sbjct 190 GCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACGCCACCACACGCTC 132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482837576975840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |