Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4461 156 4e-33 seq8880 87.8 2e-12 seq82826 84.2 2e-11 >seq4461 Length=101207 Score = 156 bits (172), Expect = 4e-33 Identities = 527/818 (64%), Gaps = 34/818 (4%) Strand=Plus/Minus Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 |||||||||||||||| ||||| ||||| | |||||||||||| || | |||||| Sbjct 14609 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAGG 14550 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 ||| | || ||| | || || || |||||| | ||||||||| | Sbjct 14549 CTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACATGTCG 14490 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCG 148505 | ||| ||| | ||||||||||||||| || ||||| ||| | || ||| || Sbjct 14489 GTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACAGGTGAGCCTTCA 14430 Query 148506 TACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAG 148565 |||| ||| || || || | ||||||||||||||||| ||||| || ||| ||||| Sbjct 14429 TACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAG 14370 Query 148566 TAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATA 148625 || || |||||| || || |||||||||| || ||||||| |||| | Sbjct 14369 TAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCTTCGGGGCTTTCGAACGGATAA 14310 Query 148626 CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTA 148685 |||| | | | || ||||| || | ||||| || || | || ||||||||||| Sbjct 14309 CGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCAATCCCGATGGGCCGGTGGCGC 14250 Query 148686 ATGTTGGAGAGGCGCGC-GCTCTCG---AGCGGATAGTGGTTGCGGTCGATGATCTTGTC 148741 ||||||| | | | ||| ||| | || |||| |||| || |||||||||| Sbjct 14249 TTGTTGGA---CCTCTCTGCT-TCGGGTACGGGGTAGTAGTTGATCTCAATGATCTTGTT 14194 Query 148742 AAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAATCGTACTT 148795 || || ||| | |||||| || | | |||| || |||||| || | Sbjct 14193 CAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAGTCAAAA--GT-CCG 14137 Query 148796 GTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATC 148855 ||| || | | ||| | |||||| ||||| || || || || ||| ||| || Sbjct 14136 CTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTC 14077 Query 148856 CGGGGCGCTGTACTCTAC-----GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCC 148910 | | | ||||||| || |||||| ||||| ||| Sbjct 14076 CTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGTACCC 14017 Query 148911 ACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCA 148970 | ||||| || |||||||| || ||||| ||||| ||||| |||||||| || || Sbjct 14016 AGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTCCCG 13957 Query 148971 GTTTCCACCTGCGTTTCCACTAT---GAACCGA---TGCAGGTCCTGCGCGCGCACTTGC 149024 |||||| ||| | || | || | ||| | ||| | ||| | | ||| | | Sbjct 13956 GTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCAC---CACCTTC 13900 Query 149025 TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAG 149084 | | | | || |||| || ||| ||| || ||| ||| ||| |||| || || Sbjct 13899 TTCAC---CCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAG 13843 Query 149085 CAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122 || ||||| || ||||| |||| || || ||||| || Sbjct 13842 CACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 13805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 223/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 149418 ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477 |||||||| ||||| || | || || ||| ||||| | || || ||||||| Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 |||||||||||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTG 13458 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCG 149597 || ||||| ||| | ||| || |||||| || || | |||| || || | | Sbjct 13457 GTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTG 13398 Query 149598 TACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGC 149657 || | ||| | || || ||||| || || ||||| || | | || | ||| ||| Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338 Query 149658 ATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAGCCGTTTTCT 149714 || |||||||| ||||| |||||||| ||| || || |||| ||| | || Sbjct 13337 ATGTGCTGCGGGCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGATAGGAGCGCTCC 13281 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTC 149749 || || ||| |||||||| | |||||| ||| || Sbjct 13280 AGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATC 13246 >seq8880 Length=69162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 || ||||| || || | ||||||||||||| ||||||| ||||| || | || ||| Sbjct 10901 TATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTG 10960 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 |||| |||||||| ||||||||||| |||||||| || Sbjct 10961 GTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 10998 >seq82826 Length=583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||||| || |||||||||||||| | ||| |||| | |||| ||| Sbjct 250 ATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCTTCAGCCAGAAGATG 191 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||||||| ||| || ||||| | ||||||||| ||| || || |||| ||||| Sbjct 190 GCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACGCCACCACACGCTC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482837576975840