Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq9653 86.0 7e-12 >seq9653 Length=39613 Score = 86.0 bits (94), Expect = 7e-12 Identities = 233/353 (66%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || | |||| | ||| || || || |||||||| | || | Sbjct 19136 GCCAGCTCTTTCGGTGATTTAAAGTCATCCACATGGATAAACGCGTCTCCTTGAACAAAG 19077 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || |||| || | ||| || || || | ||||| | |||| ||||| Sbjct 19076 TTCTCATAGTTCTGCCTAGTTGTACCAAGAACCACTGGTACTG----TGCCCACAGAGAG 19021 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || |||||||| || || || |||||| | || | ||||||||||| | | ||| Sbjct 19020 TGGGATGTAGAGTTTCTCAGTGATGTAGTCCTTATGGATTGAGTTCTCAAAGGACAAATA 18961 Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 ||| |||||| || |||||| || ||| | || | || | || || || || | | Sbjct 18960 GAACTTACAGCTAGACATAGTA--GGAATGTAATCTTTGTCAGCGATGTATTCCCCAAAT 18903 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || ||| |||| | || |||||||| | ||| ||| ||| || | | Sbjct 18902 GCATGTCCATATGCATGAACCTCGATGTGTTTGTACAACTCATTGTAATATTTCACCCGC 18843 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC 177292 || || || ||||| || || || | ||||||||| | ||| ||||||| Sbjct 18842 ACATGTTCTGGATTCCAGTTACTCACAATCCAGCAAACCAGTTTG-TCTTTGC 18791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577734150713600