Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 122 8e-23
>seq4461
Length=101207
Score = 122 bits (134), Expect = 8e-23
Identities = 431/671 (64%), Gaps = 14/671 (2%)
Strand=Plus/Minus
Query 146940 GCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGG 146999
||| ||| | | ||| | ||||| || ||||| | || ||||| |||| || || ||
Sbjct 14628 GCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGG 14569
Query 147000 CATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AG 147058
|||| |||| || || || | || |||| ||| || ||||||| ||
Sbjct 14568 CATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAG 14509
Query 147059 TTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTC 147118
|| |||||||||||| | || ||| | |||||||||||||||||| | |||
Sbjct 14508 CTT-CCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTT 14450
Query 147119 GACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAG 147177
||| | || ||| | |||| ||| || || |||| |||| ||| |||
Sbjct 14449 TGCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAG 14391
Query 147178 CTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCT 147237
|| ||||| || || | ||||| || || ||| ||| || |||| || | |||
Sbjct 14390 CTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCT 14331
Query 147238 TCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCG 147297
|| ||| ||| | || ||||| || | ||||| || ||||||||||||| ||
Sbjct 14330 TCGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCA 14271
Query 147298 ACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTG 147357
| ||||| || || || | |||| | || || | || ||| |||| ||||
Sbjct 14270 ATCCCGATGGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTG 14211
Query 147358 CGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCG 147417
||||| |||||||| ||||| ||| | || || || | | || ||||
Sbjct 14210 ATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTA 14151
Query 147418 AAATCATAAGTCCCGTC-TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATT 147476
|| ||| |||||| || || ||||| ||| ||| | |||||| || ||||| ||
Sbjct 14150 AAGTCAAAAGTCCGCTCAGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAGGTT 14095
Query 147477 GCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC-----GATTTCGGCGCACAGGTTG 147531
||||| ||| ||| || | | |||||| ||| |
Sbjct 14094 ACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNG 14035
Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591
||||| || ||| |||| || ||||| ||||| |||| |||||| ||||||||| ||
Sbjct 14034 CTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAG 13975
Query 147592 AGCATGTACGG 147602
|||||||| ||
Sbjct 13974 AGCATGTAGGG 13964
Score = 109 bits (120), Expect = 5e-19
Identities = 237/352 (67%), Gaps = 6/352 (2%)
Strand=Plus/Minus
Query 148057 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116
||||| || ||||| || | || || ||| ||||| | || || |||||||
Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518
Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176
|| ||||||||||| | || | | | |||| || || ||| ||||| |||
Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGG---CCGG 13461
Query 148177 GT--TCCCGCCGA-GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATG 148233
| ||||| || ||| ||||| || ||||| || ||| | || | || || |
Sbjct 13460 TTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 13401
Query 148234 CGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATG 148293
|| |||||||| ||| | || ||||| || ||||| || || | || || | ||||
Sbjct 13400 TTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATG 13341
Query 148294 AGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCG 148353
||||||||||| || || ||||| |||| ||||||||| || ||||| ||
Sbjct 13340 AGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCC 13281
Query 148354 AGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405
||||||||| | |||||| | ||||| ||||||| || ||| |||||
Sbjct 13280 AGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 13229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476036192417760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |