Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4461 122 8e-23 >seq4461 Length=101207 Score = 122 bits (134), Expect = 8e-23 Identities = 431/671 (64%), Gaps = 14/671 (2%) Strand=Plus/Minus Query 146940 GCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGG 146999 ||| ||| | | ||| | ||||| || ||||| | || ||||| |||| || || || Sbjct 14628 GCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGG 14569 Query 147000 CATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AG 147058 |||| |||| || || || | || |||| ||| || ||||||| || Sbjct 14568 CATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAG 14509 Query 147059 TTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTC 147118 || |||||||||||| | || ||| | |||||||||||||||||| | ||| Sbjct 14508 CTT-CCAGTCCCACATGTCGGTCGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTT 14450 Query 147119 GACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAG 147177 ||| | || ||| | |||| ||| || || |||| |||| ||| ||| Sbjct 14449 TGCTGACAGGTGAGCCTTCATACGTCTCGTAAGGACCCA-GCTCTGCCGCCAGTTCGCAG 14391 Query 147178 CTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCT 147237 || ||||| || || | ||||| || || ||| ||| || |||| || | ||| Sbjct 14390 CTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTGAGCAGTTGAGCT 14331 Query 147238 TCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCG 147297 || ||| ||| | || ||||| || | ||||| || ||||||||||||| || Sbjct 14330 TCGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCA 14271 Query 147298 ACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTG 147357 | ||||| || || || | |||| | || || | || ||| |||| |||| Sbjct 14270 ATCCCGATGGGCCGGTGGCGCTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTG 14211 Query 147358 CGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCG 147417 ||||| |||||||| ||||| ||| | || || || | | || |||| Sbjct 14210 ATCTCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTA 14151 Query 147418 AAATCATAAGTCCCGTC-TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATT 147476 || ||| |||||| || || ||||| ||| ||| | |||||| || ||||| || Sbjct 14150 AAGTCAAAAGTCCGCTCAGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAGGTT 14095 Query 147477 GCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC-----GATTTCGGCGCACAGGTTG 147531 ||||| ||| ||| || | | |||||| ||| | Sbjct 14094 ACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACNNNNNNNNNNNNNNNNNNNNNNNG 14035 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 ||||| || ||| |||| || ||||| ||||| |||| |||||| ||||||||| || Sbjct 14034 CTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAG 13975 Query 147592 AGCATGTACGG 147602 |||||||| || Sbjct 13974 AGCATGTAGGG 13964 Score = 109 bits (120), Expect = 5e-19 Identities = 237/352 (67%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 148057 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116 ||||| || ||||| || | || || ||| ||||| | || || ||||||| Sbjct 13577 ACGCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATG 13518 Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 || ||||||||||| | || | | | |||| || || ||| ||||| ||| Sbjct 13517 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGG---CCGG 13461 Query 148177 GT--TCCCGCCGA-GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATG 148233 | ||||| || ||| ||||| || ||||| || ||| | || | || || | Sbjct 13460 TTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 13401 Query 148234 CGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATG 148293 || |||||||| ||| | || ||||| || ||||| || || | || || | |||| Sbjct 13400 TTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATG 13341 Query 148294 AGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCG 148353 ||||||||||| || || ||||| |||| ||||||||| || ||||| || Sbjct 13340 AGCATGTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCC 13281 Query 148354 AGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 ||||||||| | |||||| | ||||| ||||||| || ||| ||||| Sbjct 13280 AGGGTTTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGATGG 13229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476036192417760