Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq43518 89.7 2e-14
seq23108 84.2 7e-13
seq17197 84.2 7e-13
seq3481 80.6 8e-12
seq11723 78.8 3e-11
>seq43518
Length=210
Score = 89.7 bits (98), Expect = 2e-14
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| | ||||||||||||| |||||| ||||||||| |
Sbjct 2 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCTCTGGTTCAATC 61
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 62 CCGGGTTTCGGC 73
>seq23108
Length=24968
Score = 84.2 bits (92), Expect = 7e-13
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||||| |||| |||||||||||||||||| |||||| |
Sbjct 1488 GCCGAAATAGCTCAGTTGGGAGAGCATCAGACCGAAGATCTAAAGGTCCCTCGTTCAATC 1429
Query 2829 C 2829
|
Sbjct 1428 C 1428
>seq17197
Length=53632
Score = 84.2 bits (92), Expect = 7e-13
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||| ||||| | ||||||||||||| || ||||||||||||| |
Sbjct 31545 GCTGAAATAGCTCAGTTGGCAGAGCGTCAGACTGAAGATCTGAAAGTCCCTGGTTCAATC 31604
Query 2829 CCGGGCTTC 2837
|| || |||
Sbjct 31605 CCAGGTTTC 31613
>seq3481
Length=248240
Score = 80.6 bits (88), Expect = 8e-12
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| | ||||||||||||| |||||| ||||||| | |
Sbjct 37945 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCTGGTTCGATC 37886
Query 2829 CCGGGCTTC 2837
| ||| |||
Sbjct 37885 CTGGGTTTC 37877
>seq11723
Length=64351
Score = 78.8 bits (86), Expect = 3e-11
Identities = 58/68 (85%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||| | ||||||||||||| |||||||||||||||| |
Sbjct 23681 GCCGAAATAGCTCAGTTGGGAGAATGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 23740
Query 2829 CCGGGCTT 2836
| ||| ||
Sbjct 23741 CTGGGTTT 23748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15832868468820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |