Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq43518 89.7 2e-14 seq23108 84.2 7e-13 seq17197 84.2 7e-13 seq3481 80.6 8e-12 seq11723 78.8 3e-11 >seq43518 Length=210 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||| ||||||||| | Sbjct 2 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCTCTGGTTCAATC 61 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 62 CCGGGTTTCGGC 73 >seq23108 Length=24968 Score = 84.2 bits (92), Expect = 7e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||||| |||| |||||||||||||||||| |||||| | Sbjct 1488 GCCGAAATAGCTCAGTTGGGAGAGCATCAGACCGAAGATCTAAAGGTCCCTCGTTCAATC 1429 Query 2829 C 2829 | Sbjct 1428 C 1428 >seq17197 Length=53632 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||| ||||| | ||||||||||||| || ||||||||||||| | Sbjct 31545 GCTGAAATAGCTCAGTTGGCAGAGCGTCAGACTGAAGATCTGAAAGTCCCTGGTTCAATC 31604 Query 2829 CCGGGCTTC 2837 || || ||| Sbjct 31605 CCAGGTTTC 31613 >seq3481 Length=248240 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||| ||||||| | | Sbjct 37945 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCTGGTTCGATC 37886 Query 2829 CCGGGCTTC 2837 | ||| ||| Sbjct 37885 CTGGGTTTC 37877 >seq11723 Length=64351 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 23681 GCCGAAATAGCTCAGTTGGGAGAATGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 23740 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 23741 CTGGGTTT 23748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15832868468820