Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq68020 143 4e-28
seq4461 114 2e-19
seq761 102 1e-15
>seq68020
Length=333
Score = 143 bits (158), Expect = 4e-28
Identities = 170/229 (74%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| || || |||| |||| || |||| |||||
Sbjct 9 TACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCTTCCAAGGCCATG 62
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || || | ||||| | || ||||||| | | ||||| |||
Sbjct 63 AGCATCATGAACTCCTTCGTTAGTGACATCTTTGAGCGCATCGCCTCAGAGGCTTCTCGT 122
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || |||||||||| ||| ||| | | | |||||||||||||||||||||
Sbjct 123 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 182
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| ||| || ||||||| ||||||||| || ||||||||||
Sbjct 183 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 231
>seq4461
Length=101207
Score = 114 bits (126), Expect = 2e-19
Identities = 196/284 (69%), Gaps = 8/284 (3%)
Strand=Plus/Plus
Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955
||||| || ||| ||||||| || |||| || ||||| || ||||| || || |
Sbjct 13406 TGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGC 13465
Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015
||||| || ||||| ||| | | |||||||| || |||||||||||||| |
Sbjct 13466 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACG 13525
Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075
|||| || ||||||||||| ||||| ||||| | || ||||| ||||| | || |
Sbjct 13526 ACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGG--- 13582
Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131
|| ||| | | | || |||| | || ||||| |||||| | ||||| ||
Sbjct 13583 -TGAGCTGCATCAGATCGACTGGGAGCTACATCGCCGGCACTAACGGCAACTCCAATGGG 13641
Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGT 260175
|| || || ||||| || |||| || |||| || ||||| ||
Sbjct 13642 CTGGTCCCGATGCTGCGGGTTTACAATAACACCGCCCGCTATGT 13685
>seq761
Length=347371
Score = 102 bits (112), Expect = 1e-15
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036
|| |||||||| || || |||||| | |||| || |||| |||||| || ||| ||
Sbjct 126460 ATTATGAACTCCTTCGTGAACGACCTTTTCGAGCGGATCGCCACCGAAGCGTCCCGCTTG 126519
Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096
|| | | |||||||||| ||| ||| || | ||| | ||||||||||| | |||
Sbjct 126520 GCTCAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCGTCAGGCTG 126579
Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| ||| || || ||||||| |||||| || |||||||||||||
Sbjct 126580 CTGCTGCCGGGGGAGCTGGCCAAGCACGCGGTGTCCGAGGGCACCA 126625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7168502054403592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |