Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq68020 143 4e-28 seq4461 114 2e-19 seq761 102 1e-15 >seq68020 Length=333 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || || |||| |||| || |||| ||||| Sbjct 9 TACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCTTCCAAGGCCATG 62 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | ||||| | || ||||||| | | ||||| ||| Sbjct 63 AGCATCATGAACTCCTTCGTTAGTGACATCTTTGAGCGCATCGCCTCAGAGGCTTCTCGT 122 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 123 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 182 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 183 CTCCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 231 >seq4461 Length=101207 Score = 114 bits (126), Expect = 2e-19 Identities = 196/284 (69%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || |||| || ||||| || ||||| || || | Sbjct 13406 TGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCTCTTCAACGCCGGGACCAACCGGC 13465 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||||||||| | Sbjct 13466 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGCATCTACG 13525 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||| || ||||||||||| ||||| ||||| | || ||||| ||||| | || | Sbjct 13526 ACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGCTGGCGGGATCGGCGTGGCGG--- 13582 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | | | || |||| | || ||||| |||||| | ||||| || Sbjct 13583 -TGAGCTGCATCAGATCGACTGGGAGCTACATCGCCGGCACTAACGGCAACTCCAATGGG 13641 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGT 260175 || || || ||||| || |||| || |||| || ||||| || Sbjct 13642 CTGGTCCCGATGCTGCGGGTTTACAATAACACCGCCCGCTATGT 13685 >seq761 Length=347371 Score = 102 bits (112), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 || |||||||| || || |||||| | |||| || |||| |||||| || ||| || Sbjct 126460 ATTATGAACTCCTTCGTGAACGACCTTTTCGAGCGGATCGCCACCGAAGCGTCCCGCTTG 126519 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | | |||||||||| ||| ||| || | ||| | ||||||||||| | ||| Sbjct 126520 GCTCAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCGTCAGGCTG 126579 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || || ||||||| |||||| || ||||||||||||| Sbjct 126580 CTGCTGCCGGGGGAGCTGGCCAAGCACGCGGTGTCCGAGGGCACCA 126625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7168502054403592