Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq8880 102 1e-16
seq4859 98.7 1e-15
>seq8880
Length=69162
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370
||| ||||| || ||| ||||| || ||||| || ||||||| || |||||||||||||
Sbjct 10896 TTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCT 10955
Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430
| || |||| |||| |||||||||||||| || || | |||||||| || || |||
Sbjct 10956 GGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTCTGTCT 11015
Query 69431 G 69431
|
Sbjct 11016 G 11016
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
||||||||||||| ||||| || | |||||| || | || || || || ||||| |
Sbjct 8352 TCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGTGAATGT 8411
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || ||||| ||||||||| ||| || | |||||| ||||| || | | | |||
Sbjct 8412 TGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 8471
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609
| || | |||||||||| || ||| | | ||| || | |||||||||
Sbjct 8472 TCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG 8520
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015
|| || ||||| ||||| | | | || ||||||||||| ||||| | ||| ||||
Sbjct 9721 TACGTCTCATAGGGTCCGAATTCTGCTGCCAGTTCACAACTGGCCTCCAGGGCAGCGTAG 9780
Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075
|| || || ||||| || | | ||||| || || || |||| |||||||| ||
Sbjct 9781 TAGATGGTCTCGAAGATGTGAATGTTGAGTAACTGGGCCTCCGGACTTTCGAATGGGTAG 9840
Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135
| | || || || || || |||| ||||| || ||||| || || ||||| || | |
Sbjct 9841 CGCATGAGGATGAAGGCGTCGGCCAGACCCTGCACACCAATTCCTATTGGTCTGTGACGC 9900
Query 69136 TTATTTGAACTTTCAGCTTCTGG 69158
|| || || ||||||| | |||
Sbjct 9901 TTGTTGGATTTTTCAGCCTGTGG 9923
>seq4859
Length=382710
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
||||| || || || | ||| || || || || || || |||||||| || | ||| ||
Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| | ||||||||||| || || || |||||||| || ||||| |||||||| ||
Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815
Query 39761 ACAAGTCTCTCTCC 39774
|| |||| ||| ||
Sbjct 368814 ACCAGTCGCTCCCC 368801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686080078878240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |