Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8880 102 1e-16 seq4859 98.7 1e-15 >seq8880 Length=69162 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 69311 TTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCT 69370 ||| ||||| || ||| ||||| || ||||| || ||||||| || ||||||||||||| Sbjct 10896 TTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCT 10955 Query 69371 GATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCT 69430 | || |||| |||| |||||||||||||| || || | |||||||| || || ||| Sbjct 10956 GGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTCTGTCT 11015 Query 69431 G 69431 | Sbjct 11016 G 11016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||||||||||| ||||| || | |||||| || | || || || || ||||| | Sbjct 8352 TCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGTGAATGT 8411 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| ||||||||| ||| || | |||||| ||||| || | | | ||| Sbjct 8412 TGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 8471 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || | ||||||||| Sbjct 8472 TCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG 8520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || || ||||| ||||| | | | || ||||||||||| ||||| | ||| |||| Sbjct 9721 TACGTCTCATAGGGTCCGAATTCTGCTGCCAGTTCACAACTGGCCTCCAGGGCAGCGTAG 9780 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || ||||| || | | ||||| || || || |||| |||||||| || Sbjct 9781 TAGATGGTCTCGAAGATGTGAATGTTGAGTAACTGGGCCTCCGGACTTTCGAATGGGTAG 9840 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || || || || || |||| ||||| || ||||| || || ||||| || | | Sbjct 9841 CGCATGAGGATGAAGGCGTCGGCCAGACCCTGCACACCAATTCCTATTGGTCTGTGACGC 9900 Query 69136 TTATTTGAACTTTCAGCTTCTGG 69158 || || || ||||||| | ||| Sbjct 9901 TTGTTGGATTTTTCAGCCTGTGG 9923 >seq4859 Length=382710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || || || || || || |||||||| || | ||| || Sbjct 368934 TCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTT 368875 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| | ||||||||||| || || || |||||||| || ||||| |||||||| || Sbjct 368874 AGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCC 368815 Query 39761 ACAAGTCTCTCTCC 39774 || |||| ||| || Sbjct 368814 ACCAGTCGCTCCCC 368801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686080078878240