Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq10513 102 6e-17
seq167 98.7 8e-16
>seq10513
Length=65366
Score = 102 bits (112), Expect = 6e-17
Identities = 102/130 (78%), Gaps = 8/130 (6%)
Strand=Plus/Minus
Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370
|||||| |||| ||||||| | || || ||||||||||||| ||||| || ||||||
Sbjct 53346 CCAGACCACCTGCAGCTCCGAGTTCAGAAGGTCCAGCTTCATGAAGTCCTCTTTGTTGG- 53288
Query 77371 AACTGACC-CTCCGCCA---TGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACT 77426
||| | |||| ||| | ||||||||| |||||| ||||||||||||| |||||
Sbjct 53287 ---TGATCTCTCCTCCAGATTTCAGCCTCCAACCGTTCAGCTTCCAGTTCTTCACCCAAC 53231
Query 77427 TAGTCACACC 77436
| ||||||||
Sbjct 53230 TGGTCACACC 53221
>seq167
Length=124328
Score = 98.7 bits (108), Expect = 8e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096
||| ||| | | ||||| |||| || || || | || ||||| || ||||| ||
Sbjct 25473 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTTTGTGAT 25532
Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156
|| || ||||||||||| |||| || | || | |||||||| |||||||| || ||
Sbjct 25533 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 25592
Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
||||| || || ||||| || ||||| || ||||| ||||| ||||
Sbjct 25593 AACATTGCCAGCTATGCCCTTCTCACATACATGATCGCACATATTAC 25639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396988476978580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |