Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10513 102 6e-17 seq167 98.7 8e-16 >seq10513 Length=65366 Score = 102 bits (112), Expect = 6e-17 Identities = 102/130 (78%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||| ||||||| | || || ||||||||||||| ||||| || |||||| Sbjct 53346 CCAGACCACCTGCAGCTCCGAGTTCAGAAGGTCCAGCTTCATGAAGTCCTCTTTGTTGG- 53288 Query 77371 AACTGACC-CTCCGCCA---TGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACT 77426 ||| | |||| ||| | ||||||||| |||||| ||||||||||||| ||||| Sbjct 53287 ---TGATCTCTCCTCCAGATTTCAGCCTCCAACCGTTCAGCTTCCAGTTCTTCACCCAAC 53231 Query 77427 TAGTCACACC 77436 | |||||||| Sbjct 53230 TGGTCACACC 53221 >seq167 Length=124328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 ||| ||| | | ||||| |||| || || || | || ||||| || ||||| || Sbjct 25473 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTTTGTGAT 25532 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || ||||||||||| |||| || | || | |||||||| |||||||| || || Sbjct 25533 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 25592 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| || || ||||| || ||||| || ||||| ||||| |||| Sbjct 25593 AACATTGCCAGCTATGCCCTTCTCACATACATGATCGCACATATTAC 25639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396988476978580