Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 122 1e-22
seq8880 86.0 8e-12
>seq4461
Length=101207
Score = 122 bits (134), Expect = 1e-22
Identities = 181/252 (72%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895
|| || || ||||| | || || || | || |||| | | || || | ||||| ||
Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515
Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 111953
| ||| ||| ||||| |||||| |||||||| ||||||| |||||| | ||| |
Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCC--GGTTGG 13457
Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 112012
| || || |||||||||||||| | ||||| ||||| || | | |||| | || |
Sbjct 13456 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACC-ACTTCTCCGACAGCAGGTTG 13398
Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072
|| ||||| | | | | |||||||||||| |||||||| |||| | |||| ||||| |
Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338
Query 112073 ATGTACTGTGGG 112084
|||| ||| |||
Sbjct 13337 ATGTGCTGCGGG 13326
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372
||| || || |||| |||| ||||| |||||| | ||||| || || |||||||||||
Sbjct 14029 CTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCAT 13970
Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420
|||||||||||| || |||||||| || | || || || | ||||||
Sbjct 13969 GTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAAC 13922
>seq8880
Length=69162
Score = 86.0 bits (94), Expect = 8e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324
||| || ||| ||| || |||| |||||||| || | ||| || || || ||
Sbjct 10885 CTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCC 10944
Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384
|| ||| | ||||| ||||| ||||||| || |||||||||||||||||||| || ||
Sbjct 10945 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACC 11004
Query 111385 CGTCTCCGTCTG 111396
||||| |||||
Sbjct 11005 TGTCTCTGTCTG 11016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627274310793600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |