Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4461 122 1e-22 seq8880 86.0 8e-12 >seq4461 Length=101207 Score = 122 bits (134), Expect = 1e-22 Identities = 181/252 (72%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || ||||| | || || || | || |||| | | || || | ||||| || Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT--G 111953 | ||| ||| ||||| |||||| |||||||| ||||||| |||||| | ||| | Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCC--GGTTGG 13457 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 112012 | || || |||||||||||||| | ||||| ||||| || | | |||| | || | Sbjct 13456 TCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACC-ACTTCTCCGACAGCAGGTTG 13398 Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072 || ||||| | | | | |||||||||||| |||||||| |||| | |||| ||||| | Sbjct 13397 TAGGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGC 13338 Query 112073 ATGTACTGTGGG 112084 |||| ||| ||| Sbjct 13337 ATGTGCTGCGGG 13326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||| || || |||| |||| ||||| |||||| | ||||| || || ||||||||||| Sbjct 14029 CTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCAT 13970 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 |||||||||||| || |||||||| || | || || || | |||||| Sbjct 13969 GTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAAC 13922 >seq8880 Length=69162 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| || ||| ||| || |||| |||||||| || | ||| || || || || Sbjct 10885 CTCGTCTTTACTTGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCC 10944 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || |||||||||||||||||||| || || Sbjct 10945 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACC 11004 Query 111385 CGTCTCCGTCTG 111396 ||||| ||||| Sbjct 11005 TGTCTCTGTCTG 11016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627274310793600