Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4461 127 3e-24 seq8880 95.1 1e-14 seq82826 91.5 2e-13 seq4859 91.5 2e-13 >seq4461 Length=101207 Score = 127 bits (140), Expect = 3e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 ||||||| | | || || ||||||| || ||||| |||| |||| | |||| ||| Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 |||||||| |||| || |||| | || || ||||||||||| ||||| | |||||| Sbjct 13484 AAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGG 13425 Query 119460 ATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 ||||| || | | |||| | || ||||||||| | | |||| ||||||||| || Sbjct 13424 GTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCC 13366 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGT 119550 ||| ||||||| ||| |||| ||| | ||||| Sbjct 13365 GTGGATACCGACCGACACCCTCATGAGCATGT 13334 >seq8880 Length=69162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| ||||| Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||||||||||| Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412 >seq82826 Length=583 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| ||| || ||||| || || || |||| Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || ||| ||||||||||||||||| |||||||| ||||||| Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 144 CCACCACACGCTC 132 >seq4859 Length=382710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 130048 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107 |||||||||||| |||||| || || ||||| || || | |||||| | |||| | || Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864 Query 130108 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| ||||||||| ||||||||||||||||| ||| || || || | || ||||| Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617689088852960