Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 127 3e-24
seq8880 95.1 1e-14
seq82826 91.5 2e-13
seq4859 91.5 2e-13
>seq4461
Length=101207
Score = 127 bits (140), Expect = 3e-24
Identities = 157/212 (74%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399
||||||| | | || || ||||||| || ||||| |||| |||| | |||| |||
Sbjct 13544 GCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 13485
Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459
|||||||| |||| || |||| | || || ||||||||||| ||||| | ||||||
Sbjct 13484 AAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTTGGCGAGGCGTGG 13425
Query 119460 ATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518
||||| || | | |||| | || ||||||||| | | |||| ||||||||| ||
Sbjct 13424 GTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCATCAATGTCTTCTCC 13366
Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGT 119550
||| ||||||| ||| |||| ||| | |||||
Sbjct 13365 GTGGATACCGACCGACACCCTCATGAGCATGT 13334
>seq8880
Length=69162
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | ||| | | ||||||||||||||| ||| ||||| |||||
Sbjct 9321 TAGATGTTGCTTGTGTAAGCCTCTATGGACTCATTGTTACCCAGGATCTGGGCAGTGGAA 9380
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273
||||||||||| || |||| |||||||||||
Sbjct 9381 GCTGTGGGCATCGGGGCCAAAAGAAGGCTGTT 9412
>seq82826
Length=583
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||| ||| || ||||| || || || ||||
Sbjct 264 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCGCGTTTCT 205
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154
||| |||||| || || ||| ||||||||||||||||| |||||||| |||||||
Sbjct 204 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 145
Query 130155 CAAAGAGACGCTC 130167
| | | ||||||
Sbjct 144 CCACCACACGCTC 132
>seq4859
Length=382710
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 130048 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107
|||||||||||| |||||| || || ||||| || || | |||||| | |||| | ||
Sbjct 368923 GATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCTTTAGCCAGTAGAT 368864
Query 130108 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167
||| ||||||||| ||||||||||||||||| ||| || || || | || |||||
Sbjct 368863 GGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAGCCACCAGTCGCTC 368804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617689088852960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |