Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4461 109 6e-19 >seq4461 Length=101207 Score = 109 bits (120), Expect = 6e-19 Identities = 178/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||| | ||| | ||||||| || || |||||||||||| | | Sbjct 13326 CCCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAGACATTGATGCCGC 13385 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||| | | || ||||| ||||| | |||||||||| Sbjct 13386 CATTGAGACCTACAACCTGCTGTCGGAGAAGT-GGTTCACCCACGCCTCGCCAACCCTCT 13444 Query 104340 TCAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||| || || || ||| | || || ||||||| |||||||| |||||| ||||| Sbjct 13445 TCAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 13502 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||| ||| | || ||||| | || || | | |||| || | || || || | || Sbjct 13503 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 13562 Query 104458 TGGGGGTATTGG 104469 ||| || || || Sbjct 13563 TGGCGGGATCGG 13574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582557125007840