Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4461 163 3e-35 seq82826 91.5 2e-13 seq8880 87.8 2e-12 >seq4461 Length=101207 Score = 163 bits (180), Expect = 3e-35 Identities = 207/282 (73%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||| || || | | ||||| ||| | ||||||| ||| || || |||||||||||| Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| ||| |||||||| |||| |||||||||||| |||| ||| || ||| || Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 13455 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 ||||||||||||||||| |||| ||||| ||||| |||| | || ||| | ||| Sbjct 13454 CCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 13395 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 ||||| || || | ||| || |||||||| ||||||| || | ||||| | | Sbjct 13394 GTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATG 13335 Query 79894 TACTG-GGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAG 79934 | ||| ||||| |||| | || ||| || | |||| |||| Sbjct 13334 TGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATCTTCAGCAG 13294 Score = 156 bits (172), Expect = 5e-33 Identities = 186/252 (74%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||| | || ||||||| ||||| || || ||| | || | Sbjct 13327 CCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAGACATT----GATGC 13382 Query 19163 CGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218 ||| ||||| ||| ||||| || |||||| ||||| ||||| |||| ||||| Sbjct 13383 CGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCT 13442 Query 19219 TTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGA 19278 ||||||||||| || ||| |||||| |||| ||||| ||||| | || |||||||| Sbjct 13443 CTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 13502 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTC 19338 ||||||||| |||||||||||||| || || ||| ||||||| | ||| ||||| | | Sbjct 13503 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 13562 Query 19339 CGGGGGTATCGG 19350 || || ||||| Sbjct 13563 TGGCGGGATCGG 13574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 |||||||||| || | ||||| ||||||||||||| || |||||||| |||||| || Sbjct 14030 ACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCA 13971 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 |||| ||||||||||| || |||| || || | | ||| ||| | | | | ||| Sbjct 13970 TGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT 13911 Query 79247 GGACAACCTTCTT 79259 || |||||||| Sbjct 13910 TCACCACCTTCTT 13898 >seq82826 Length=583 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| |||||||||||||||||||| || || || |||||||| || || || || Sbjct 155 CGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAACGCGG 214 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| ||| ||||||||| || | | ||||||| Sbjct 215 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 264 >seq8880 Length=69162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||||| ||| || ||||||||||| | || | ||||||| ||||| | Sbjct 10910 ATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 10969 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || || ||||| Sbjct 10970 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547863032255040