Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 163 3e-35
seq82826 91.5 2e-13
seq8880 87.8 2e-12
>seq4461
Length=101207
Score = 163 bits (180), Expect = 3e-35
Identities = 207/282 (73%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
||||| || || | | ||||| ||| | ||||||| ||| || || ||||||||||||
Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773
||||| ||| |||||||| |||| |||||||||||| |||| ||| || ||| ||
Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 13455
Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833
||||||||||||||||| |||| ||||| ||||| |||| | || ||| | |||
Sbjct 13454 CCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 13395
Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893
||||| || || | ||| || |||||||| ||||||| || | ||||| | |
Sbjct 13394 GTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATG 13335
Query 79894 TACTG-GGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAG 79934
| ||| ||||| |||| | || ||| || | |||| ||||
Sbjct 13334 TGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATCTTCAGCAG 13294
Score = 156 bits (172), Expect = 5e-33
Identities = 186/252 (74%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|| ||| || | ||||| | || ||||||| ||||| || || ||| | || |
Sbjct 13327 CCGCAGCACATGCTCATGAGGGTGTCGGTCGGTATCCACGGAGAAGACATT----GATGC 13382
Query 19163 CGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCT 19218
||| ||||| ||| ||||| || |||||| ||||| ||||| |||| |||||
Sbjct 13383 CGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCGCCAACCCT 13442
Query 19219 TTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGA 19278
||||||||||| || ||| |||||| |||| ||||| ||||| | || ||||||||
Sbjct 13443 CTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 13502
Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTC 19338
||||||||| |||||||||||||| || || ||| ||||||| | ||| ||||| | |
Sbjct 13503 TGACAGCATCGAGGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAATCCGC 13562
Query 19339 CGGGGGTATCGG 19350
|| || |||||
Sbjct 13563 TGGCGGGATCGG 13574
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186
|||||||||| || | ||||| ||||||||||||| || |||||||| |||||| ||
Sbjct 14030 ACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCA 13971
Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246
|||| ||||||||||| || |||| || || | | ||| ||| | | | | |||
Sbjct 13970 TGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT 13911
Query 79247 GGACAACCTTCTT 79259
|| ||||||||
Sbjct 13910 TCACCACCTTCTT 13898
>seq82826
Length=583
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061
|||||| |||||||||||||||||||| || || || |||||||| || || || ||
Sbjct 155 CGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAACGCGG 214
Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
||| ||||| ||||||| ||| ||||||||| || | | |||||||
Sbjct 215 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAGG 264
>seq8880
Length=69162
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
||||||||||||| ||| || ||||||||||| | || | ||||||| ||||| |
Sbjct 10910 ATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 10969
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||||||||||||| |||||| || || || |||||
Sbjct 10970 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547863032255040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |