Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4461 104 3e-17 seq8880 84.2 2e-11 >seq4461 Length=101207 Score = 104 bits (114), Expect = 3e-17 Identities = 193/281 (69%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 ||||| || || | | || ||||| | || ||| | |||| ||| || || || ||| Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| || | |||||| | |||| ||| ||||| |||| ||| || | || | Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 13455 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||| ||||| || ||||| | ||||| |||| | | |||| ||||| ||| Sbjct 13454 CCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 13395 Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741 || || || || ||| || || ||||| ||||||| | || | ||| | |||| Sbjct 13394 GTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATG 13335 Query 81742 TACTG-GGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCA 81781 | ||| ||||| |||| | | ||| || |||||| ||| Sbjct 13334 TGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATCTTCAGCA 13295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 |||| || ||||||||||| | |||||| ||| ||||| ||||| |||||| || Sbjct 14030 ACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCA 13971 Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 |||| || || ||||| || ||| |||| || |||||||| ||||| || | |||| Sbjct 13970 TGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT 13911 Query 81098 TGACCACCTT 81107 | |||||||| Sbjct 13910 TCACCACCTT 13901 >seq8880 Length=69162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| | || || ||||| ||||||| ||| || || || || ||||| |||| ||| Sbjct 10897 TGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTG 10956 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTC 81056 ||| | ||| |||||| |||||||||||| |||||| || ||||| ||||| Sbjct 10957 GTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569622349017920