Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4461 104 3e-17
seq8880 84.2 2e-11
>seq4461
Length=101207
Score = 104 bits (114), Expect = 3e-17
Identities = 193/281 (69%), Gaps = 2/281 (1%)
Strand=Plus/Minus
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
||||| || || | | || ||||| | || ||| | |||| ||| || || || |||
Sbjct 13574 CCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCC 13515
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|||||||| || | |||||| | |||| ||| ||||| |||| ||| || | || |
Sbjct 13514 TCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTC 13455
Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681
||||| ||||| || ||||| | ||||| |||| | | |||| ||||| |||
Sbjct 13454 CCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 13395
Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741
|| || || || ||| || || ||||| ||||||| | || | ||| | ||||
Sbjct 13394 GTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCATG 13335
Query 81742 TACTG-GGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCA 81781
| ||| ||||| |||| | | ||| || |||||| |||
Sbjct 13334 TGCTGCGGGCG-CTCGGCCACTTTCCCGTTGATCTTCAGCA 13295
Score = 91.5 bits (100), Expect = 2e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037
|||| || ||||||||||| | |||||| ||| ||||| ||||| |||||| ||
Sbjct 14030 ACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCGTCTTTGTAGAGCA 13971
Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097
|||| || || ||||| || ||| |||| || |||||||| ||||| || | ||||
Sbjct 13970 TGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCT 13911
Query 81098 TGACCACCTT 81107
| ||||||||
Sbjct 13910 TCACCACCTT 13901
>seq8880
Length=69162
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002
|||| | || || ||||| ||||||| ||| || || || || ||||| |||| |||
Sbjct 10897 TGTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTG 10956
Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTC 81056
||| | ||| |||||| |||||||||||| |||||| || ||||| |||||
Sbjct 10957 GTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569622349017920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |