Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_028238.1
Length=188534
Score E
Sequences producing significant alignments: (Bits) Value
seq10680 98.7 1e-15
seq1845 84.2 3e-11
>seq10680
Length=108585
Score = 98.7 bits (108), Expect = 1e-15
Identities = 130/179 (73%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 32652 GAAATCAGAATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTA 32711
|||| ||| |||| |||| | |||| ||||| || || ||||| || || || ||
Sbjct 28768 GAAAACAGG-TAGCAGGAGCTCTCTGGTGGTATTTCATTTCCAAAGGCATTGAGTACCTG 28826
Query 32712 GATACTATTTTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATAC 32771
|| || | || ||||| |||| || || || ||||| |||| ||| ||||||| |||
Sbjct 28827 GACACAGTATTTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTAC 28886
Query 32772 CACCATTTTACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830
||||| | |||||||| || | | ||||| || || || ||| | |||||||||||
Sbjct 28887 CACCACTGCACCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 28945
>seq1845
Length=70248
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 32676 TGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGA 32735
|||| |||| ||||| |||||| | || | || ||||| | || || ||| | ||
Sbjct 58115 TGGTGGTATTACATCTCCAAAGGTGTGGAGTTCCTGGATACAGTCTTTTTTATACTAAGG 58174
Query 32736 AAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTA 32795
||||| || |||||||| ||||| | ||||| ||||| || | ||||||||||| |
Sbjct 58175 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTTTATCCTC 58234
Query 32796 GGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831
| ||||| || || || ||| | | || ||||||
Sbjct 58235 TGGTGGATCGGTATCAAGTGGGTCCCTGGTGGACAG 58270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 602453092523840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |