Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq10680 98.7 1e-15 seq1845 84.2 3e-11 >seq10680 Length=108585 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 32652 GAAATCAGAATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTA 32711 |||| ||| |||| |||| | |||| ||||| || || ||||| || || || || Sbjct 28768 GAAAACAGG-TAGCAGGAGCTCTCTGGTGGTATTTCATTTCCAAAGGCATTGAGTACCTG 28826 Query 32712 GATACTATTTTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATAC 32771 || || | || ||||| |||| || || || ||||| |||| ||| ||||||| ||| Sbjct 28827 GACACAGTATTTTTCATTCTGAGGAAAAAGTTCAACCAGGTTACCTTCCTGCACGTCTAC 28886 Query 32772 CACCATTTTACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||||| | |||||||| || | | ||||| || || || ||| | ||||||||||| Sbjct 28887 CACCACTGCACCATGTTCACGCTCTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 28945 >seq1845 Length=70248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 32676 TGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGA 32735 |||| |||| ||||| |||||| | || | || ||||| | || || ||| | || Sbjct 58115 TGGTGGTATTACATCTCCAAAGGTGTGGAGTTCCTGGATACAGTCTTTTTTATACTAAGG 58174 Query 32736 AAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTA 32795 ||||| || |||||||| ||||| | ||||| ||||| || | ||||||||||| | Sbjct 58175 AAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTGTACCATGTTTATCCTC 58234 Query 32796 GGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | ||||| || || || ||| | | || |||||| Sbjct 58235 TGGTGGATCGGTATCAAGTGGGTCCCTGGTGGACAG 58270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602453092523840