Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq167 143 2e-29 >seq167 Length=124328 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || ||||| ||||| || ||||| |||||| |||||||||| ||||| || || Sbjct 25473 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTTTGTGAT 25532 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || |||| |||||||| |||||||||| ||| Sbjct 25533 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 25592 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 |||||||| || || || || ||||| ||||||||||| ||| Sbjct 25593 AACATTGCCAGCTATGCCCTTCTCACATACATGATCGCACAT 25634 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| ||||||||||| ||||| || || || || ||||||||||| |||||||||| || Sbjct 25634 ATGTGCGATCATGTATGTGAGAAGGGCATAGCTGGCAATGTTGAAAGGCACCCCTAGACC 25575 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 |||||| |||| || || || ||||| || |||||||| |||| || ||||| || Sbjct 25574 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAAACATAGAACTG 25515 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| |||||| ||||| || ||||| ||||| || || Sbjct 25514 GCAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGAGGTAGGTC 25473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 |||||||| ||| ||| || ||||||||||| || |||| || || | ||| || Sbjct 23948 AAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGTGCCTTCCTA 24007 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||| | ||| ||| || | |||||||| ||| | || || || || ||||||||| Sbjct 24008 GACAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGTATGGGTTCCAG 24067 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || ||||| Sbjct 24068 TGGAGGCACTTTGGTGCAGAGTA 24090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| |||||||||||||| || || || || | ||| |||||||| Sbjct 24090 TACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCT 24031 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||| || ||| | || || |||| || ||||||||||| Sbjct 24030 CTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTT 23971 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || ||| ||| |||||||| Sbjct 23970 ACTCCCTTCTCCGATAGCTCCTT 23948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447721593827520