Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq167 143 2e-29
>seq167
Length=124328
Score = 143 bits (158), Expect = 2e-29
Identities = 129/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
|| || ||||| ||||| || ||||| |||||| |||||||||| ||||| || ||
Sbjct 25473 GACCTACCTCTTATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTATGTTTGTGAT 25532
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| |||||||| || ||||| || || || |||| |||||||| |||||||||| |||
Sbjct 25533 GGAGAGCTGTCATGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTC 25592
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726
|||||||| || || || || ||||| ||||||||||| |||
Sbjct 25593 AACATTGCCAGCTATGCCCTTCTCACATACATGATCGCACAT 25634
Score = 143 bits (158), Expect = 2e-29
Identities = 129/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678
||| ||||||||||| ||||| || || || || ||||||||||| |||||||||| ||
Sbjct 25634 ATGTGCGATCATGTATGTGAGAAGGGCATAGCTGGCAATGTTGAAAGGCACCCCTAGACC 25575
Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738
|||||| |||| || || || ||||| || |||||||| |||| || ||||| ||
Sbjct 25574 CATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAAACATAGAACTG 25515
Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|||||||| |||||| ||||| || ||||| ||||| || ||
Sbjct 25514 GCAGAGGGCGTGGCAGGGGGGCAGAGCCATAAGAGGTAGGTC 25473
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363
|||||||| ||| ||| || ||||||||||| || |||| || || | ||| ||
Sbjct 23948 AAGGAGCTATCGGAGAAGGGAGTAAAGATCTGGGATGCCAACGGCTCCCGTGCCTTCCTA 24007
Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423
|||| | ||| ||| || | |||||||| ||| | || || || || |||||||||
Sbjct 24008 GACAGCCTGGGCTTCACAGAGAGAGAGGAGGGGGACCTCGGACCTGTGTATGGGTTCCAG 24067
Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446
||||| |||||||| || |||||
Sbjct 24068 TGGAGGCACTTTGGTGCAGAGTA 24090
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
||||| || |||||||| |||||||||||||| || || || || | ||| ||||||||
Sbjct 24090 TACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCT 24031
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| || ||| ||| | |||| || ||| | || || |||| || |||||||||||
Sbjct 24030 CTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTT 23971
Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041
|| ||| ||| ||||||||
Sbjct 23970 ACTCCCTTCTCCGATAGCTCCTT 23948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447721593827520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |