Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq167 116 3e-21 seq4144 95.1 1e-14 >seq167 Length=124328 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||||||||| ||||| ||||| ||||| ||||| || || | |||| Sbjct 24078 AAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTCCCCCTCCTCTCTCTCTGTGAAG 24019 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||| | ||| | | ||| |||||||| |||||||||||||| |||||||| Sbjct 24018 CCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATCCCAGATCTTTACTCCCTTCTCC 23959 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 30166 || ||||| || | ||||| || |||| || Sbjct 23958 GATAGCTCCTTTGCATTTGTTGATCCCTGTG 23928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||| ||||||| |||||| |||| || |||||||| ||| | ||| || Sbjct 25263 CTTTGGGGTTCCATGCACACATGATGATCCGCCGATCCTCTGGGTTTTTCTTAATGGTGT 25204 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | || |||||||||||||| || ||| ||||| |||| Sbjct 25203 CGATGATATTCTGCAGCTGATCCACACCTTGCCCTGAGTAATCTG 25159 >seq4144 Length=159843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 |||||||||||| || | ||| | || ||| |||| ||||| ||||| || ||||| || Sbjct 5847 CTCCCTGCTGAGAACAATGTTGATCCGGTCCTTCAGGGGTCTGTTCTTCTCCGGGATTGA 5906 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGC 114385 |||||| ||||| || ||||| |||||||| |||||| Sbjct 5907 GAACCAGGTCTTCCTGCCCATGATCACCACATTCTGC 5943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405685434797176