Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq167 131 1e-25 >seq167 Length=124328 Score = 131 bits (144), Expect = 1e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || || |||||||| ||||| || | |||||||| ||||| || || ||||| || ||| Sbjct 25633 TGTGCGATCATGTATGTGAGAAGGGCATAGCTGGCAATGTTGAAAGGCACCCCTAGACCC 25574 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 ||||| |||| | |||||| |||||||| || ||||||||||| | || || ||||| Sbjct 25573 ATGTCGGCCGAGCGCTGGTACAGCTGACATGACAGCTCTCCATCACAAACATAGAACTGG 25514 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || | ||||||||| || || |||||||| || Sbjct 25513 CAGAGGGCGTGGCAGGGGGGCAGAGCCATAAG 25482 Score = 129 bits (142), Expect = 4e-25 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||||| || || |||||||| |||||||| ||||| ||||| ||||| Sbjct 24100 CATGTTTTTGTACTCTGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCGAGGTC 24041 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || || | ||||||| |||| | ||| | | ||| |||||||| || Sbjct 24040 CCCCTCCTCTCTCTCTGTGAAGCCCAGGCTGTCTAGGAAGGCACGGGAGCCGTTGGCATC 23981 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTG 27660 |||||||||||| |||||||| || ||||| || | ||||| || |||| || Sbjct 23980 CCAGATCTTTACTCCCTTCTCCGATAGCTCCTTTGCATTTGTTGATCCCTGTG 23928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369072552837596