Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8880 100 4e-16 >seq8880 Length=69162 Score = 100 bits (110), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| ||||||||||||| |||||||| | |||||| || | || || || || | Sbjct 8346 CCAGCTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGT 8405 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 |||| || | |||||||| ||||||||| ||| || | ||| || ||||| || | | Sbjct 8406 GAATGTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGA 8465 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 ||||| || | |||||||||| ||||| | | || || | ||||||||| Sbjct 8466 CAGTCTTCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG 8520 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| || ||| || || || ||||| || ||||||| |||||||||||||| ||||| Sbjct 10900 ATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGGTT 10959 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 | |||| | ||||| | |||||| || || || | ||||| || || || |||| Sbjct 10960 GGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTCTGTCTG 11016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693830716826240