Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8880 100 4e-16 seq4461 100 4e-16 >seq8880 Length=69162 Score = 100 bits (110), Expect = 4e-16 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| ||||||||||||| |||||||| | |||||| || | || || || || | Sbjct 8346 CCAGCTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGT 8405 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 |||| || | |||||||| ||||||||| ||| || | ||| || ||||| || | | Sbjct 8406 GAATGTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGA 8465 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT 75617 ||||| || | |||||||||| ||||| | | || || | ||||||||| ||| Sbjct 8466 CAGTCTTCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG--GAT 8523 Query 75618 TT 75619 || Sbjct 8524 TT 8525 >seq4461 Length=101207 Score = 100 bits (110), Expect = 4e-16 Identities = 229/345 (66%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 ||| || || || || ||| || || || || || | |||| ||||| |||||||| Sbjct 13575 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 13516 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995 ||| || || |||||| ||||| || || || ||||| |||| || | | || Sbjct 13515 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGT 13456 Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055 || || || || | || || || || || |||||||| || || || || || ||||| Sbjct 13455 CCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 13396 Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 || ||||| | || || || || | || || || || | || | ||| | ||| Sbjct 13395 GGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCAT 13336 Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||| || || || | || || || |||| || || || |||| || Sbjct 13335 GTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGT 13276 Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || ||||| ||||||| ||||| ||||| || ||||| || Sbjct 13275 TTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGAT 13231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 77351 TTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGA 77410 || || |||||||| || || || ||||| || || || || || || || ||||| || Sbjct 13138 TTGGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGG 13079 Query 77411 TGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTA 77470 || | || || |||||| | || || ||||||| || |||| || | || || Sbjct 13078 TGCTTGGTCGTCAGGGTGGCCGTGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGTG 13019 Query 77471 ACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCG 77530 || ||| | || | || || || || ||||||| || | | ||||| || || || Sbjct 13018 ACGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCT 12959 Query 77531 GTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTC 77590 | |||| ||| || || | || || || || ||||||||||| |||||||| | Sbjct 12958 GCATTCAGACCGTAGCAGAGCTTCTGGATCCGGGAGGTGATTTTATCGAACATGACGCGC 12899 Query 77591 TCCTTACATCCAT 77603 |||| | ||||| Sbjct 12898 TCCTGGCGTCCAT 12886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712074280293120