Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq8880 100 4e-16
seq4461 100 4e-16
>seq8880
Length=69162
Score = 100 bits (110), Expect = 4e-16
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497
|||| ||||||||||||| |||||||| | |||||| || | || || || || |
Sbjct 8346 CCAGCTTCCATCCGTAGAAGTGCATGCTGGAGAGTTTGCCGTAGTTGGGCTCAGCAATGT 8405
Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557
|||| || | |||||||| ||||||||| ||| || | ||| || ||||| || | |
Sbjct 8406 GAATGTTGAGAGACTGACTCTGATCGATGTAAGTGCCACGATCTGCTGCCATCTTGAGGA 8465
Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT 75617
||||| || | |||||||||| ||||| | | || || | ||||||||| |||
Sbjct 8466 CAGTCTTCTGGGAGATTTCCCAAACTGTTTTATACAGCTGCTTAAGATCATCTGG--GAT 8523
Query 75618 TT 75619
||
Sbjct 8524 TT 8525
>seq4461
Length=101207
Score = 100 bits (110), Expect = 4e-16
Identities = 229/345 (66%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935
||| || || || || ||| || || || || || | |||| ||||| ||||||||
Sbjct 13575 GCCGATCCCGCCAGCGGATTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 13516
Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 76995
||| || || |||||| ||||| || || || ||||| |||| || | | ||
Sbjct 13515 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGT 13456
Query 76996 TCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTA 77055
|| || || || | || || || || || |||||||| || || || || || |||||
Sbjct 13455 CCCGGCGTTGAAGAGGGTTGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 13396
Query 77056 TGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACAT 77115
|| ||||| | || || || || | || || || || | || | ||| | |||
Sbjct 13395 GGTCTCAATGGCGGCATCAATGTCTTCTCCGTGGATACCGACCGACACCCTCATGAGCAT 13336
Query 77116 ATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175
||||| || || || | || || || |||| || || || |||| ||
Sbjct 13335 GTGCTGCGGGCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGT 13276
Query 77176 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
||| || ||||| ||||||| ||||| ||||| || ||||| ||
Sbjct 13275 TTTGAAGCCAAAGAAGTTGTAGGAAAAATCTCTGTCATAAATGAT 13231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 172/253 (68%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 77351 TTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGA 77410
|| || |||||||| || || || ||||| || || || || || || || ||||| ||
Sbjct 13138 TTGGTCTCCTTGTGAAGGTTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGG 13079
Query 77411 TGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTA 77470
|| | || || |||||| | || || ||||||| || |||| || | || ||
Sbjct 13078 TGCTTGGTCGTCAGGGTGGCCGTGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGTG 13019
Query 77471 ACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCG 77530
|| ||| | || | || || || || ||||||| || | | ||||| || || ||
Sbjct 13018 ACGCCGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCT 12959
Query 77531 GTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTC 77590
| |||| ||| || || | || || || || ||||||||||| |||||||| |
Sbjct 12958 GCATTCAGACCGTAGCAGAGCTTCTGGATCCGGGAGGTGATTTTATCGAACATGACGCGC 12899
Query 77591 TCCTTACATCCAT 77603
|||| | |||||
Sbjct 12898 TCCTGGCGTCCAT 12886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712074280293120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |