Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq12745 91.5 3e-13
seq34451 89.7 1e-12
seq27000 86.0 1e-11
>seq12745
Length=60746
Score = 91.5 bits (100), Expect = 3e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
||| |||||||||||||||||||| || || | ||||||||||| | ||| || ||
Sbjct 36251 ACCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGTTCAACCTC 36192
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || ||||| |||||||| || || ||||| |||||||| ||
Sbjct 36191 AAGGGTAATGGTCTTTCCCGTCAACGTTTTCACGAAGATCTGCATGTT 36144
Score = 91.5 bits (100), Expect = 3e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969
|||| |||||||||||||| | |||||||| |||||||| || ||||| || |||||||
Sbjct 37329 CTTTCTGGATGTTGTAGTCTGACAGCGTGCGCCCATCCTCAAGCTGTTTTCCAGCAAAGA 37270
Query 282970 TCAAACGTTGTTGGTCACCCGGAATACC 282997
||| |||||| || ||| ||||||||
Sbjct 37269 TCAGACGTTGCTGATCAGGGGGAATACC 37242
>seq34451
Length=11587
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 9820 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCCTGA 9762
Score = 84.2 bits (92), Expect = 5e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808
||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 10892 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCAGGGTTTGATTCCC 10837
>seq27000
Length=4504
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168755 AGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 1897 AGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTCCCCGA 1953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1045444790529464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |