Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12745 91.5 3e-13 seq34451 89.7 1e-12 seq27000 86.0 1e-11 >seq12745 Length=60746 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| |||||||||||||||||||| || || | ||||||||||| | ||| || || Sbjct 36251 ACCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGTTCAACCTC 36192 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || ||||| |||||||| || || ||||| |||||||| || Sbjct 36191 AAGGGTAATGGTCTTTCCCGTCAACGTTTTCACGAAGATCTGCATGTT 36144 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||||||||||| | |||||||| |||||||| || ||||| || ||||||| Sbjct 37329 CTTTCTGGATGTTGTAGTCTGACAGCGTGCGCCCATCCTCAAGCTGTTTTCCAGCAAAGA 37270 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACC 282997 ||| |||||| || ||| |||||||| Sbjct 37269 TCAGACGTTGCTGATCAGGGGGAATACC 37242 >seq34451 Length=11587 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || Sbjct 9820 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCCTGA 9762 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct 10892 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGCAGGAGACCAGGGTTTGATTCCC 10837 >seq27000 Length=4504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168755 AGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||| |||||||| |||| |||||| |||||||||||||||||||||||| Sbjct 1897 AGTATAGTGGTGAGTATCCCCGCCTATCACGCGGGAGACCGGGGTTCAATTCCCCGA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045444790529464