Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4859 91.5 2e-13 seq5484 82.4 8e-11 >seq4859 Length=382710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 |||||||||| || || | |||||| || || || | || ||||||| |||| || | Sbjct 368936 CTTCATCCCTGCTGATGAGTTCATTGGAGAAGGTAAGGCCGGGCATTAGGCCTCTCTTCT 368877 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| | || ||||||||||| || || ||||| || ||||| ||||| ||||| | Sbjct 368876 TTAGCCAGTAGATGGCAGCAAATGAGCCTGAGAAGAAGATCCCCTCTACAGCTGCAAAAG 368817 Query 23651 CCACAAGACG 23660 |||| || || Sbjct 368816 CCACCAGTCG 368807 >seq5484 Length=237921 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 139427 CAGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTG 139486 |||| ||||| |||||||| |||||||| ||||| | || ||| | | |||||||||| Sbjct 32299 CAGGCGTCCTCCATACAAAGTTTTGGATCGTTGACATGAAGCATGTGTTCATTGGAAGTG 32358 Query 139487 CTAACATGGACTGGCGATCACTAACTCAAGTAAAA 139521 |||||||||||||| | | || || || || ||| Sbjct 32359 CTAACATGGACTGGAGGGCTCTTACACAGGTGAAA 32393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520858850802400