Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1328 167 3e-36
seq495 122 1e-22
seq11914 89.7 7e-13
>seq1328
Length=146004
Score = 167 bits (184), Expect = 3e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421
||| || || | || |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 129463 GAAGCCAACTGCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATT 129404
Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481
| |||| | ||||||||||||||| ||||| |||| || | || |||| || |||||
Sbjct 129403 CCCCATCAAGCCTTTGAGGGAGAAAGGAGCTCCCATTTCCACCATTGTCTCCCCAAAGAT 129344
Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541
|||||| | |||||||||||||||| | |||| ||| |||||||| || || || ||
Sbjct 129343 GGCGTTCTGTCGGGGCTTTTCCACCAGCAGCCCGGGGTAAAGCTCCACGGCATCAACATC 129284
Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| || || || ||| ||| || || || || ||||||||
Sbjct 129283 GCCATACAGCTCCTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 129239
Score = 129 bits (142), Expect = 8e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||| |||||| |||| |||||||| ||| |||||| ||| || || ||
Sbjct 127889 TCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTCAGGGTGA 127830
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| |||| || || ||||| ||||||||||| | ||||| || ||||||||||||
Sbjct 127829 ACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGCGTACATC 127770
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392
||||| || || |||||||| |||||||| || || |||||
Sbjct 127769 ATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 127729
>seq495
Length=21320
Score = 122 bits (134), Expect = 1e-22
Identities = 184/258 (71%), Gaps = 8/258 (3%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || ||||| || |||| ||||||||||| || ||||| ||| ||| |||||||
Sbjct 8269 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 8210
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| |||| | || ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 8209 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 8150
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GG 9410
| || || |||| || || || |||| ||||||| || ||||| |||| | ||
Sbjct 8149 GTCAGGCCCGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG-TTGTTCAGGAGG 8091
Query 9411 CA---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467
| |||| ||| || | ||||||||| |||| ||| || || || |||||
Sbjct 8090 GAAACCTTC---AGGGTACACCATGTGCACTGGGACCTCTGATACGCTTGGAGGGTACAT 8034
Query 9468 TTCACCGTCAATCATCTG 9485
|| || | ||||||||
Sbjct 8033 CTCCCCATTTATCATCTG 8016
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Minus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||| ||| ||| || || || | ||| | | |||| ||| |
Sbjct 12925 GGACACCACTTGGTGTTCAGACAAACCAGTTTCTTTAGAGTGGATGTTTTGATGATGTTG 12866
Query 8363 AACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420
|| ||| |||| || |||||||| || |||||||||||| | |||||| |||| ||
Sbjct 12865 AAGCCC--GTCTGGCCTCCGAAGGTACTAGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 12808
Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480
| | | | |||||| ||||||||||| || |||| || | |||||||| || || |
Sbjct 12807 TTCCAAGTAAGCCTTTCAGGGAGAACGGGGCGCCCATTTCCACCATGCTCTCTCCAAATA 12748
Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510
||| |||||| || | || |||| || ||
Sbjct 12747 TGGAGTTGGGTCGTGTTTTCTCCAGCAGGA 12718
>seq11914
Length=219126
Score = 89.7 bits (98), Expect = 7e-13
Identities = 172/254 (68%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || |||||||| || ||||||||||| || ||||||||| ||| ||| ||
Sbjct 209895 TCACCTATGATGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTTGGGTGC 209954
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| |||||| || || || || ||||| || || || ||||| | ||||| |||| |
Sbjct 209955 TCTGCTTTCAGGACGTCACAGACTCTGTTATGCTCTCTAAGCCACAGCGTGGCATACAAC 210014
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
| ||||| | || || || |||| ||||| | |||| | | | | | ||
Sbjct 210015 CCCAAACCAGGGAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCTGCAGGG 210074
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471
| | ||||| ||| |||| | ||| | | || | | |||||| ||||||||
Sbjct 210075 ATCCCAGGAGGGTAGCTCATCTTCACAGGAGCATCAGCTATGGTGGGGGGGTACATTTCT 210134
Query 9472 CCGTCAATCATCTG 9485
|| | || |||||
Sbjct 210135 CCATTGATTATCTG 210148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716011923984640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |