Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1328 167 3e-36 seq495 122 1e-22 seq11914 89.7 7e-13 >seq1328 Length=146004 Score = 167 bits (184), Expect = 3e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| || || | || |||||||||||||||||||||||| ||||||||||||| || Sbjct 129463 GAAGCCAACTGCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATTGGATT 129404 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | |||| | ||||||||||||||| ||||| |||| || | || |||| || ||||| Sbjct 129403 CCCCATCAAGCCTTTGAGGGAGAAAGGAGCTCCCATTTCCACCATTGTCTCCCCAAAGAT 129344 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||| | |||||||||||||||| | |||| ||| |||||||| || || || || Sbjct 129343 GGCGTTCTGTCGGGGCTTTTCCACCAGCAGCCCGGGGTAAAGCTCCACGGCATCAACATC 129284 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || || ||| ||| || || || || |||||||| Sbjct 129283 GCCATACAGCTCCTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 129239 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| |||||||| ||| |||||| ||| || || || Sbjct 127889 TCACCAATAAGGATGAGCCGAGCCGTCTGGAAGAGTCTTTCGTCATCCCAGTCAGGGTGA 127830 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| || || ||||| ||||||||||| | ||||| || |||||||||||| Sbjct 127829 ACTTCCTTCAAAATGTCACACACTCTGTTGTGTTCACGAAGCCAAATGGTGGCGTACATC 127770 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || |||||||| |||||||| || || ||||| Sbjct 127769 ATGAGACCGGGGACCAGGCCGAAAGCCTCGTGGCCAACAGC 127729 >seq495 Length=21320 Score = 122 bits (134), Expect = 1e-22 Identities = 184/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||| || |||| ||||||||||| || ||||| ||| ||| ||||||| Sbjct 8269 TCACCAATAATAATAAGTCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTTGGATGT 8210 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||| | || ||||| ||||||||||||||||||||||||||||| |||| Sbjct 8209 TCACCCTTCAAGATGTCACACACTCTGTTGTGTTCCCTGAGCCAGATAGTGGCATACAAG 8150 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GG 9410 | || || |||| || || || |||| ||||||| || ||||| |||| | || Sbjct 8149 GTCAGGCCCGGTATGAGACCGAACACCTCCTGACCGATGGCGAGACG-TTGTTCAGGAGG 8091 Query 9411 CA---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 | |||| ||| || | ||||||||| |||| ||| || || || ||||| Sbjct 8090 GAAACCTTC---AGGGTACACCATGTGCACTGGGACCTCTGATACGCTTGGAGGGTACAT 8034 Query 9468 TTCACCGTCAATCATCTG 9485 || || | |||||||| Sbjct 8033 CTCCCCATTTATCATCTG 8016 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| ||| ||| || || || | ||| | | |||| ||| | Sbjct 12925 GGACACCACTTGGTGTTCAGACAAACCAGTTTCTTTAGAGTGGATGTTTTGATGATGTTG 12866 Query 8363 AACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 || ||| |||| || |||||||| || |||||||||||| | |||||| |||| || Sbjct 12865 AAGCCC--GTCTGGCCTCCGAAGGTACTAGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 12808 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | | | | |||||| ||||||||||| || |||| || | |||||||| || || | Sbjct 12807 TTCCAAGTAAGCCTTTCAGGGAGAACGGGGCGCCCATTTCCACCATGCTCTCTCCAAATA 12748 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 ||| |||||| || | || |||| || || Sbjct 12747 TGGAGTTGGGTCGTGTTTTCTCCAGCAGGA 12718 >seq11914 Length=219126 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||| || ||||||||||| || ||||||||| ||| ||| || Sbjct 209895 TCACCTATGATGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTTGGGTGC 209954 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| || || || || ||||| || || || ||||| | ||||| |||| | Sbjct 209955 TCTGCTTTCAGGACGTCACAGACTCTGTTATGCTCTCTAAGCCACAGCGTGGCATACAAC 210014 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || || || |||| ||||| | |||| | | | | | || Sbjct 210015 CCCAAACCAGGGAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCTGCAGGG 210074 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | ||||| ||| |||| | ||| | | || | | |||||| |||||||| Sbjct 210075 ATCCCAGGAGGGTAGCTCATCTTCACAGGAGCATCAGCTATGGTGGGGGGGTACATTTCT 210134 Query 9472 CCGTCAATCATCTG 9485 || | || ||||| Sbjct 210135 CCATTGATTATCTG 210148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716011923984640