Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1203 82.4 6e-11 seq155 82.4 6e-11 >seq1203 Length=218618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 |||||| | |||| || ||||| || ||||| || |||||||| || | ||||| ||| Sbjct 2026 TACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTCAACATCGCCAGCTATGCCCTT 2085 Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || |||||||| | || ||| ||||||||||||| Sbjct 2086 CTCACCTACATGATCGCACATATTACAGGACTTAA 2120 >seq155 Length=1349651 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 |||||| | |||| || ||||| || ||||| || |||||||| || | ||||| ||| Sbjct 1338893 TACCAGCGCTCGGCCGACATGGGTCTAGGGGTGCCTTTCAACATCGCCAGCTATGCCCTT 1338952 Query 19101 CTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || |||||||| | || ||| ||||||||||||| Sbjct 1338953 CTCACCTACATGATCGCACATATTACAGGACTTAA 1338987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399458918345655