Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq656 403 2e-107 >seq656 Length=490082 Score = 403 bits (446), Expect = 2e-107 Identities = 1231/1898 (65%), Gaps = 21/1898 (1%) Strand=Plus/Minus Query 53132 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 53191 || || || ||||| || | || || ||||| || | || || || ||||| || || Sbjct 300672 AGAAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTG 300613 Query 53192 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 53251 ||||| || | || | ||||| || || |||| || ||||| || || || || ||| Sbjct 300612 CTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGC 300553 Query 53252 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGT 53311 || || |||| || | || || || | |||| | | ||| || || || || | Sbjct 300552 ATGGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGC 300493 Query 53312 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 | ||| | ||| | || | || || || || || || Sbjct 300492 TTCCAGTCCCACATGTCGGTGGGAGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTG 300433 Query 53372 CTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTC 53431 ||| | || ||| | || || ||||| || || || | || ||||| || || Sbjct 300432 CTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCTG 300373 Query 53432 GCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC 53491 ||||| | || |||| || ||||| |||||||| | | || || ||| ||||| Sbjct 300372 GCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTCT 300313 Query 53492 AGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATA 53551 |||| || || || ||| | || || || |||||||| || || || || || || Sbjct 300312 GGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGATC 300253 Query 53552 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 53611 ||||| || | || | || || || | || ||||| || | || || || || || Sbjct 300252 CCGATGGGCCGGTGGCGTTTGTTGGACCTCTCTGCTTCGGGTACGGGGTAGTAGTTGATC 300193 Query 53612 TCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 53671 || || || || || ||||| | || || || ||| || ||| || ||| Sbjct 300192 TCAATGATCTTGTTCAGGTTCTTCACGATCACCTTGGTGACCGAGGCCAGCTTCTTAAAG 300133 Query 53672 TC-AAATT--GTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACG 53728 || ||| | | || | || ||||||| | || || || ||||| ||||| || Sbjct 300132 TCGAAAGTCCGCTCAGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACC 300073 Query 53729 GCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 || ||||| | | | | | || | | ||||| ||||| || || || ||||||| Sbjct 300072 GCCACCTCGTC--CTTGCTGGTGTACTCCACGATCTCCGTGCAGAGGTTGCTGCACTTGA 300015 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 |||| || | || || || || ||||| |||| || || ||||| ||||| ||| | | Sbjct 300014 TGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATGTAGG 299955 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 |||| || ||||| |||| || || || || || | ||| || ||||||| | | Sbjct 299954 GCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAACCTGCTGAGCCTTCACCA 299895 Query 53907 TAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCC 53964 || ||| ||| |||| ||| |||||| | || |||||||| || || Sbjct 299894 CCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAGCTTC--TCAAACTCCTCCCC 299837 Query 53965 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024 ||| | ||||| || ||||| || | |||||||||| ||||| || || Sbjct 299836 CCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAGGGACCAGTCCTGGTTGCT 299777 Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||||| ||||| || || ||||| ||||| | || ||||| ||||||| ||| Sbjct 299776 CTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAATAGGTCTCTGGCTCT 299717 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| |||||||| ||||| || || || ||||| | | | |||| | ||||| Sbjct 299716 CTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACATCAAAGTGCCA 299657 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 54204 ||| |||| ||| |||| | |||| || || ||||| || ||||| || | || | Sbjct 299656 CGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTTGCCACCCTGGTCAACATAGCG 299597 Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264 |||||||| || ||||| | || ||| || | | |||||||| || || || || Sbjct 299596 GGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCCATTGGAGTTGCCGTTAGTGCC 299537 Query 54265 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 | ||| ||||| ||| | | | || || | | | || ||||| || || Sbjct 299536 AGCGATGTAGCTCCCAGTCGATCTGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGA 299477 Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 ||| || || | ||||| | || | || || ||||||||||| || || |||||| | Sbjct 299476 TTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCCTCGATGCTGTCATCCTT 299417 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 |||| || || || ||||| |||| || || | || || || || || | ||| Sbjct 299416 CATGGCGAGCAGGAAGCAGCTGGACAGCTGCGCCCGGTTGGTCCCGGCGTTGAAGAGGGT 299357 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 || || ||||| || ||||| || || || || || ||||| ||||| || || | ||| Sbjct 299356 TGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCGGCGTC 299297 Query 54505 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 || || | || || || || | || | ||| | ||||||||| || | || | Sbjct 299296 AATGTCTTTTCCGTGGATACCGACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGC 299237 Query 54565 GATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 | || ||| || ||||||| ||||| |||| ||||| || ||||| |||| Sbjct 299236 CACTTTCCCGTTGATCTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCAAAGAAGTT 299177 Query 54625 GTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC 54684 ||| ||||| |||| || ||||| || || ||||| || || | | ||| Sbjct 299176 GTAGGAAAAATCTCTGTCATAAATGATGGAGGAATTGAGGCGGTCTTTGTTCTCCAGAAC 299117 Query 54685 TACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTT----AGGATTG 54739 | || | ||| | ||| || || || || || || ||||| | ||| ||| Sbjct 299116 GATGTCGAGGGT-CTGCTTGGAGATCATGGGGGAGTG----GCATTTGTTCAGAGGGTTG 299062 Query 54740 ACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGA 54799 || ||||| | | || | ||||||||| || |||| ||| || || || ||||| || Sbjct 299061 ACGTAGTTGTACAGGTCTTCCATCACTTCGCTGAATACTTTCTTGGTCTCCTTGTGAAGG 299002 Query 54800 TTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTG 54859 || || ||||| || || ||||| || ||||| || ||||| || | || || ||| Sbjct 299001 TTGGAGACGGCAATCCTGGCGGCGAGGATGGCGTAGTCCGGGTGCTTGGTCGTCAGGGTG 298942 Query 54860 GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 54919 || || || || |||| || ||||| | || || || || || || | || | || Sbjct 298941 GCCGCGATCTCCGCTGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAACCC 298882 Query 54920 TGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACAT 54979 ||||| |||||||| | || | ||||| | || | || | || || || Sbjct 298881 TGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCTGCATTCAGACCGTAGCAG 298822 Query 54980 AATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 | || ||||| || ||||||||||| |||||||| Sbjct 298821 AGCTTCTGGATACGGGAGGTGATTTTATCGAACATGAC 298784 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || ||||| || | || ||||| || ||||| | Sbjct 301015 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTCCCGTAGTTGGGCTCTGCGATGTGGATGT 300956 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || || ||||| ||| |||| || | |||||||||||| |||| | |||| Sbjct 300955 TCAGAGACTGGCTCTGATCTATGTAGGCGCCACGGTCTGCAGCCATCTTTAGCACAGTCT 300896 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 |||| | ||| ||||||| |||||||||| |||| | ||| ||||||| Sbjct 300895 TTTGGGAAATCTCCCAAACGGTTTTATAAAGCTGCTTCAGATCGTCTGGAA 300845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652884146320